Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4549 96.9 4e-15 seq8142 84.2 3e-11 >seq4549 Length=14857 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| || |||||||| || ||| ||| | ||| || ||| | |||||||| ||| Sbjct 13629 CCAGGTACTGGTAAGACCCTTCTGGCCAAAGCAACCGCCGGAGAAGCCAATGTCCCCTTC 13688 Query 175375 ATCCAGTG-CTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 ||| | || ||| | || | || | || |||||||||||||| || || ||| || Sbjct 13689 ATC-ACTGTCTCCGGATCAGAATTCCTCGAAATGTTTGTTGGTGTTGGCCCCGCAAGAGT 13747 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || ||| | |||| || ||||| | || ||||| || | ||||| || || || Sbjct 13748 CCGTGATATGTTTGCCATGGCCCGAAAGAACTCCCCATGCATCTTGTTCATCGACGAAAT 13807 Query 175494 TGATGCGGTGGG 175505 ||||||||| || Sbjct 13808 TGATGCGGTCGG 13819 >seq8142 Length=52432 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 75276 AGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATG 75335 |||| ||| || ||||||| | || ||| | ||||| || || ||||||||||||| Sbjct 7375 AGACCTACAACTTGATGTCCGAGCGTTGGTTTACCCACGCCACTCCCACCCTCTTCAATG 7316 Query 75336 CTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAA 75395 | ||||| |||| || ||| |||| || ||||||||| | ||| || || || | Sbjct 7315 CCGGTACTCCAATTCCCCAGCTGTCTAGCTGCTTCCTTCTGACCATGGCCGACGATTCCA 7256 Query 75396 TCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGCTGGGGG 75453 || | || ||||| || || | ||| |||||| | ||||| || || || || || Sbjct 7255 TCGATGGAATCTACACCACGCTCA-AGAG-GTGCGCTATGATCTCGAAATGCGCCGGCGG 7198 Query 75454 TATTGGGATGCACATCCATGAT 75475 ||||| | |||||||| || Sbjct 7197 AATTGGTCTCAACATCCATAAT 7176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596491807324160