Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq9793 100 5e-16 seq6048 87.8 3e-12 >seq9793 Length=2388 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| || || |||| ||| | || | || || || ||||| || Sbjct 1924 ATTCCACCTCTCAACCGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAATCA 1983 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||||| ||| || ||||||||||||||||| || | | || || || || Sbjct 1984 GAAAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAGATGAGACGTTGCTGGTCTGGG 2043 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || |||| || | |||| || || ||||| | ||| Sbjct 2044 GGGATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGACGCCTCG 2103 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || | || || ||||| || ||||| Sbjct 2104 ACCTCAAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2153 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||||||| | | |||| ||| | ||||| || || || || Sbjct 1400 ATTTGCATTCCTCCTCTCAACCTCAACACCAAATGGAGTGTAGATTCCTTCTGGATGTTG 1459 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | ||| || | |||||||||||| || || ||||||||||| Sbjct 1460 TAGTCGGAAAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAATCTCTGTTGG 1519 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||| || ||||| || || | || | ||| || || ||| Sbjct 1520 TCTGGTGGGATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATCGTGTCGCTG 1579 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || ||||| || || || || || || || || || || || ||||| Sbjct 1580 GCTTCAACCTCAAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 1635 Score = 89.7 bits (98), Expect = 9e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || ||||||||||| || || ||||| || ||||| || || ||||||||||| Sbjct 1252 ATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGGATTCCTTCTTT 1311 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || |||| || | || || || || |||| || ||||| | || || Sbjct 1312 GTCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCCGAAGCTTCGACTTCCAATGTGAT 1371 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || | |||||| || || ||||||||| Sbjct 1372 TGTCTTTCCAGTCAACGTTTTCACGAAGATTTGCATT 1408 >seq6048 Length=7890 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/155 (73%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| ||||| |||||||| || ||||| || ||| | || | ||| ||| ||| Sbjct 1891 TGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGTTCTTGACATTGTCAATGGTA 1832 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||| | ||| || || | || ||||||||||| || || ||||| || || |||||| Sbjct 1831 TCGCTTGGCTCTACCTCCAAGGTAATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGC 1772 Query 193359 ATTTT-ATTAGTAAAATAATTATTTTAAATAATAT 193392 ||||| | |||| ||| |||| ||||| || Sbjct 1771 ATTTTCGCTGAAAAAACAATAATTTACAATAAAAT 1737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899537085066240