Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5763 120 4e-21 seq7077 98.7 1e-14 seq4751 87.8 2e-11 >seq5763 Length=47425 Score = 120 bits (132), Expect = 4e-21 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| |||||| || |||| ||| ||||| ||||| | | Sbjct 14311 GCTTGGCCAGCTCTCCTGGCAGGATCAGACGAACGGAGGTTTGGATTTCGCGGGACGAAA 14370 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| | || |||||||| ||| || | | ||||||| |||| | Sbjct 14371 TTGTGGACCTCTTGTTGTACTGGGCCAGACGAGAGGCTTCAGCGGCGATGCGCTCGAAGA 14430 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||| || |||||||||| ||||| | |||| |||||| || ||| |||| Sbjct 14431 CATCGTTGACGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATTCCGGTGTCAGGGT 14490 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTA 1254559 | ||||||||||| || ||||||| | ||| ||||| Sbjct 14491 GGACCTGCTTGAGGACACGGTAGATGTA-GACGGAGTA 14527 >seq7077 Length=10159 Score = 98.7 bits (108), Expect = 1e-14 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 509060 AACTCGTACGAGCGCGGCCTCAA-CTCGCGCGAGATGTTTCTGCACATGATCGGCGGGCG 509118 ||||||||| | |||||||| | ||| |||| | || | ||| ||| || || || Sbjct 3285 AACTCGTACCTGGCCGGCCTCACGCCCGC-CGAGTTCTTCTTCCACGCGATGGGAGGACG 3343 Query 509119 CGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATCCAGCGCCGGTG 509178 ||||| || |||| ||||||||||| || |||||||| |||||||||||||||||| Sbjct 3344 TGAGGGACTGATCGATACGGCCGTCAAAACCGCCGAGACCGGCTACATCCAGCGCCGGCT 3403 Query 509179 CATCAAGTCGATGGAG 509194 |||||| | |||||| Sbjct 3404 GATCAAGGCCATGGAG 3419 >seq4751 Length=33783 Score = 87.8 bits (96), Expect = 2e-11 Identities = 134/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 1592114 ACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTT 1592173 ||||| |||||||| |||||| ||||| | | ||||| || ||| | ||| Sbjct 19712 ACCGATGACATCTCCAGCTGGGACGTTGAGTTCTTGAAAGTCGATCAAGGAACCTTATTT 19653 Query 1592174 GAGTTGATCCTCGCCGCCAACTACCTCGACATCAA--GCCTCTGCTCGATCTTGGGTGCA 1592231 || ||||| | |||||||||||| | || | | | |||| | ||| | | |||| Sbjct 19652 GAACTGATCTTGGCCGCCAACTACTTGGATGTGCATGGGCTCT--TGGATGTAGCATGCA 19595 Query 1592232 AGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACA 1592291 || |||| ||||||||||| || || ||| ||||| |||||||| ||||| |||| Sbjct 19594 AGACTGTTGCCAACATGATTAAAGGAAAGAGCCCCGAAGAGATCCGTCGCACCTTCAACA 19535 Query 1592292 TCAAGTACG 1592300 ||||| ||| Sbjct 19534 TCAAGAACG 19526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106283101226944