Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq9793 140 3e-28 seq10254 104 2e-17 seq6048 100 3e-16 seq8564 86.0 6e-12 seq8142 86.0 6e-12 >seq9793 Length=2388 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || ||||||| | Sbjct 1635 ATGCAGATCTTCGTGAAGACCCTGACTGGAAAGACCATCACTCTTGAGGTTGAAGCCAGC 1576 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||| |||||||| || || || ||| Sbjct 1575 GACACGATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAA 1516 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| ||||| ||||| || || ||| | | | || || || ||| Sbjct 1515 CAGAGATTGATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTTCCGACTACAAC 1456 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| ||||| || ||||||||| | ||| | ||||| Sbjct 1455 ATCCAGAAGGAATCTACACTCCATTTGGTGTTGAGGTTGAGAGGAGG 1409 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || || || || || || || || || || Sbjct 2153 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACTCTTGAGGTCGAGGCGTCC 2094 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| ||||| ||||| || || || || || Sbjct 2093 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCAGACCAG 2034 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||||||||| ||||| |||| ||| |||| | | || ||||||||| Sbjct 2033 CAACGTCTCATCTTTGCCGGAAAACAATTGGAAGATGGAAGAACCCTTTCTGATTATAAC 1974 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || || || |||||| | || ||| | || || Sbjct 1973 ATCCAGAAGGAATCCACTCTCCATTTGGTGCTCCGGTTGAGAGGTGG 1927 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | |||||| | || || || || || || | ||||| ||||| | Sbjct 1407 ATGCAAATCTTCGTGAAAACGTTGACTGGAAAGACAATCACATTGGAAGTCGAAGCTTCG 1348 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || |||||||||||||| || || ||||| Sbjct 1347 GACACGATCGAGAACGTGAAGGCCAAGATTCAGGACAAAGAAGGAATCCCCCCAGATCAG 1288 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||| ||||| |||||| |||| ||| | | | | | || || || ||| Sbjct 1287 CAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGGCGCACCCTCTCGGACTACAAC 1228 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||| || || || |||||||| Sbjct 1227 ATCCAAAAGGAGTCCACCCTCCACTTGGT 1199 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || || || || || | || || ||||||| | Sbjct 1925 ATGCAGATTTTCGTCAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAAGCCAGC 1866 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| ||||| ||||| || || || ||||| Sbjct 1865 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 1806 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || |||||||||||||| || || Sbjct 1805 CAGCGTTTGATCTTTGCTGGTAA 1783 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || || || || || || || | || || || || | Sbjct 1179 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGGCTTCT 1120 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| |||||||| || || || || Sbjct 1119 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 1060 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| ||||| ||||| || || ||| | | | || || || ||| Sbjct 1059 CAACGTCTCATCTTCGCCGGAAAACAACTTGAAGATGGCCGCACTCTCTCTGACTACAAC 1000 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || || |||| Sbjct 999 ATCCAGAAGGAGTCCACTCTCCATCTGGT 971 >seq10254 Length=5829 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || || | || || | ||||| || || || || | || || || | | Sbjct 5048 GATGCAAATTTTCGTCAAGACTTTGACCGGCAAGACCATCACCTTGGAGGTGGAGGGAAG 5107 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || ||| |||||||||||||| || || || || || || || Sbjct 5108 CGACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 5167 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| ||||||| || || || || ||||||||| | | | |||| || || || Sbjct 5168 GCAACGTCTGATCTTCGCTGGAAAGCAACTGGAGGATGGTCGCACCCTGTCCGACTACAA 5227 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| |||||||| || || || |||||||| Sbjct 5228 CATCCAAAAGGAGTCCACCCTCCACTTGGT 5257 >seq6048 Length=7890 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || |||||||||||||| | || ||||| | | | Sbjct 1770 ATGCAAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACCTTGGAGGTAGAGCCAAGC 1829 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || | |||||||||||||| |||||||| ||||| ||||| Sbjct 1830 GATACCATTGACAATGTCAAGAACAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCAG 1889 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| ||||||| || || Sbjct 1890 CAACGTCTGATCTTCGCAGG 1909 >seq8564 Length=72546 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 126247 GAAGCTGTCAACATTGAAAAGGAATTCTTTACGTCGGCGCTGCCATGCGATATGTTGGGA 126306 || ||||| | || |||||||||||||| | || || || || | ||| | ||| Sbjct 46978 GAGGCTGTTGAGATCGAAAAGGAATTCTTGGTGGATGCCCTTCCTTGTAAGATGATTGGA 46919 Query 126307 ATGAATTCT-ACAGCGATGTGCGAATATATAGAGTTCGTAGCGGACCGTTTGCTCGTCGA 126365 ||||||||| | || ||||||| |||| || || | |||||| |||| | | || | || Sbjct 46918 ATGAATTCTGATAG-GATGTGCCAATACATTGAATACGTAGCTGACCATCTCCTGGAAGA 46860 Query 126366 ATTACGACAACCGAAACACTT-TAATACACCCAATCCATTTAACTTTATGAACAATATTT 126424 | | |||| || | || || || | ||||||| || |||||| ||| || | Sbjct 46859 ACT-CGACCTCCCTATCATTTACAAATCCTCCAATCCTTTCCCATTTATGTCCAACATCT 46801 Query 126425 CTCTCGAGGGAAAGACTAACTTTTTCGAGAGACGTGTC 126462 || | || |||||||| ||||| ||||| ||| | ||| Sbjct 46800 CTTTGGAAGGAAAGACCAACTTCTTCGAAAGAAGAGTC 46763 >seq8142 Length=52432 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 139081 ATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCA 139140 || || || | |||||||||||| || ||||| || | |||||||| || || | Sbjct 6318 ATGGATGCCAAGTTGCACACCGCGACCTCGTCCGGCGAGGAGTATTCGATGATCTCCGTG 6377 Query 139141 CACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCA 139200 ||||| || |||||||| || || |||||||| ||||| |||||||| ||| | Sbjct 6378 CACAAGTTGGAGCACTTGATGGTGCCCAAATTTTGCTGATTCGACTTTCGGTTGCAATGA 6437 Query 139201 TCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 || ||||| | |||||| || |||||||| Sbjct 6438 TCCTTGTAGACCATATAAGGCAATCCAGTTTC 6469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449838933352960