Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6423 163 4e-34 seq5763 161 2e-33 seq4529 134 2e-25 seq4527 131 3e-24 seq7077 89.7 8e-12 >seq6423 Length=58865 Score = 163 bits (180), Expect = 4e-34 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || |||||||||||| | |||| || ||| ||| Sbjct 22271 TGTACTTGGTGACGGCCTTGGTTCCTTCGGAGACGGCGTGCTTTGCCAACTCACCGGGCA 22212 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| || || | ||||||||| ||||| | ||| ||| |||||||| Sbjct 22211 AGATCAGACGGACAGAGGTCTGGATTTCGCGAGACGAGATGGTGGATCGCTTGTTGTATT 22152 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| |||||||| | |||| || |||| | ||||||||| || ||||||| Sbjct 22151 GGGCCAATCGGGAGGCCTCGGCGGCGATACGTTCGAAGACGTCGTTGACGAAAGAGTTCA 22092 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||| | ||| |||||| || ||||||||| |||||||| | ||| Sbjct 22091 TGATGCTCATGGCCTTGGAGGAGATTCCAGTGTCGGGGTGGACCTGCTTCAACAC 22037 >seq5763 Length=47425 Score = 161 bits (178), Expect = 2e-33 Identities = 179/236 (76%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| || || |||||||||||| ||||||| || || ||| Sbjct 14272 TGTATTTGGTGACGGCCTTGGTTCCTTCGGAGACGGCGTGCTTGGCCAGCTCTCCTGGCA 14331 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| || |||| ||| ||||| ||||||| || ||| | |||||| || | Sbjct 14332 GGATCAGACGAACGGAGGTTTGGATTTCGCGGGACGAAATTGTGGACCTCTTGTT-GTAC 14390 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| || ||| || | | ||||||| |||| | |||||||| || |||||| Sbjct 14391 TGGGCCAGACGAGAGGCTTCAGCGGCGATGCGCTCGAAGACATCGTTGACGAAGGAGTTC 14450 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||| ||||| | ||| |||||| || ||| ||||| ||||||||||| || Sbjct 14451 ATGATGGACATGGCCTTGGAGGAGATTCCGGTGTCAGGGTGGACCTGCTTGAGGAC 14506 >seq4529 Length=23528 Score = 134 bits (148), Expect = 2e-25 Identities = 173/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || || || |||||| | |||| || ||| ||| Sbjct 14956 TGTACTTGGTGACGGCCTTGGTGCCTTCAGAAACAGCGTGCTTAGCCAACTCTCCGGGCA 15015 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 |||||||| || | |||||||| ||||||| ||| || |||||||| || | Sbjct 15016 GAATCAGGCGGACCGAAGTCTGGATTTCGCGGGATGAGATGGTCGAGCGCTTGTTGTATT 15075 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| ||||| || || | | | || || |||| | || ||||| || ||||| Sbjct 15076 GGGCG--AGGCGCGAAGCTTCAGCGGCAATACGTTCGAAGACATCATTGACGAAGGAGTT 15133 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||| ||| | |||| |||||| || |||||| || ||||||||||| || Sbjct 15134 CATGATGCTCATGGCTTTGGAGGAGATTCCGGTGTCGGGATGGACCTGCTTGAGGAC 15190 >seq4527 Length=22061 Score = 131 bits (144), Expect = 3e-24 Identities = 172/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || || || |||||| |||||| || ||| ||| Sbjct 3010 TGTACTTGGTGACGGCCTTGGTGCCTTCAGAAACAGCGTGCTTGGCCAACTCTCCGGGCA 2951 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||||| || | |||||||| ||||||| ||| || ||| ||||| || | Sbjct 2950 GAATCAGGCGGACCGAAGTCTGGATTTCGCGGGATGAGATGGTCGAGCGTTTGTT-GTAC 2892 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || ||||| || || | | | || || |||| | |||||||| || |||||| Sbjct 2891 TGGGCGAGGCGAGACGCTTCAGCGGCAATACGTTCGAAGACATCGTTGACGAAGGAGTTC 2832 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||| ||| | ||| ||||| || |||||| || ||||||||||| || Sbjct 2831 ATGATGCTCATGGCTTTCGATGAGATTCCGGTGTCGGGATGGACCTGCTTGAGGAC 2776 >seq7077 Length=10159 Score = 89.7 bits (98), Expect = 8e-12 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 431046 AACTCGTACGAGCGCGGCCTCAA-CTCGCGCGAGATGTTTCTGCACATGATCGGCGGGCG 431104 ||||||||| | |||||||| | ||| |||| | || | ||| ||| || || || Sbjct 3285 AACTCGTACCTGGCCGGCCTCACGCCCGC-CGAGTTCTTCTTCCACGCGATGGGAGGACG 3343 Query 431105 CGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATCCAGCGTCGGTG 431164 ||||| || |||| ||||||||||| || |||||||| |||||||||||||| ||| Sbjct 3344 TGAGGGACTGATCGATACGGCCGTCAAAACCGCCGAGACCGGCTACATCCAGCGCCGGCT 3403 Query 431165 CATCAAATCGATGGAG 431180 ||||| | |||||| Sbjct 3404 GATCAAGGCCATGGAG 3419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915136700579648