Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq9793 143 2e-29 seq10254 134 9e-27 >seq9793 Length=2388 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 |||||||| || | ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 968 AGGACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1027 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| |||||||||||||| || |||||||||||| | || | || |||||||| Sbjct 1028 TCAAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCC 1087 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| |||||||| || | ||| |||||| Sbjct 1088 TGGATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGCCTCGACCTCCAAGGTGATGGTC 1147 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || ||||||||||| Sbjct 1148 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 1179 Score = 141 bits (156), Expect = 6e-29 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| |||||||||| |||| || | || |||||||| ||||| ||||| | Sbjct 1407 TTCCTCCTCTCAACCTCAACACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGG 1466 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | || |||| || ||||| |||||||||||||||| || || |||||| | | Sbjct 1467 AAAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGTG 1526 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || |||||||| | || ||| ||||| || || |||| || |||| || Sbjct 1527 GGATTCCTTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCGATCGTGTCGCTGGCTTC 1584 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||| || ||||||||||| || |||||||| || ||||||||||| Sbjct 1585 AACCTCAAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 1635 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || ||||||| || |||| || | ||| |||||||| |||||||| || | Sbjct 1925 TTCCACCTCTCAACCGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAATCAG 1984 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| | | |||| |||| ||| |||||||| ||||| || |||||||||||| | | Sbjct 1985 AAAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAGATGAGACGTTGCTGGTCTGGGG 2044 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | || || ||||| | | || | || ||||||| Sbjct 2045 GGATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGACGCCTCGA 2104 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| || |||||||| || || | |||||| |||||||||||||| Sbjct 2105 CCTCAAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2153 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | |||| |||||| || ||||| |||||||| ||| ||||| |||| Sbjct 1196 AGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCT 1255 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || |||||||||||||||| || |||||| ||| | || | || || ||||| Sbjct 1256 TCCAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGGATTCCTTCTTTGTCC 1315 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | |||| || || ||||| || | || || ||| Sbjct 1316 TGAATCTTGGCCTTCACGTTCTCGATCGTGTCCGAAGCTTCGACTTCCAATGTGATTGTC 1375 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | || || || ||||| ||||| Sbjct 1376 TTTCCAGTCAACGTTTTCACGAAGATTTGCAT 1407 >seq10254 Length=5829 Score = 134 bits (148), Expect = 9e-27 Identities = 160/217 (74%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | |||| |||||| || ||||| ||||| || ||| |||| |||| Sbjct 5260 AGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCC 5201 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||||||||||||| ||||||||||| |||||||||||| | || | ||||||||||| Sbjct 5200 TCCAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCT 5141 Query 34886 TTTATTTTTTGTTTGAC-----GGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 | || || ||| || |||| | ||| ||| |||| || || | ||| | Sbjct 5140 TGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTTC-----CCTCCACCTCCAAGGTGA 5086 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || || | ||||| || || || ||||| Sbjct 5085 TGGTCTTGCCGGTCAAAGTCTTGACGAAAATTTGCAT 5049 Score = 89.7 bits (98), Expect = 3e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| ||||||||||||| |||||||||||| | || | || |||||||| | || || Sbjct 5420 CTTACCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTT 5361 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 || ||| | || | ||| ||||| || || | ||| |||||||| || || Sbjct 5360 GGCCTTCACGTTCTCGATGGTATCAGAAGCCTCAACCTCCAAGGTGATGGTCTTCCCGGT 5301 Query 34954 GAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| |||||||| ||||| Sbjct 5300 GAGGGTCTTCACAAAGATTTGCAT 5277 Score = 89.7 bits (98), Expect = 3e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| ||||||||||||| |||||||||||| | || | || |||||||| | || || Sbjct 5730 CTTACCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTT 5671 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 || ||| | || | ||| ||||| || || | ||| |||||||| || || Sbjct 5670 GGCCTTCACGTTCTCGATGGTATCAGAAGCCTCAACCTCCAAGGTGATGGTCTTCCCGGT 5611 Query 34954 GAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| |||||||| ||||| Sbjct 5610 GAGGGTCTTCACAAAGATTTGCAT 5587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325651391417408