Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq9793 136 3e-27 >seq9793 Length=2388 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || ||||| || ||||||||||| || |||||||| || || ||||||||||| | Sbjct 1926 TCCACCTCTCAACCGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAATCAGA 1985 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||| | ||| || | |||||| || ||| | || | | |||||| || || || Sbjct 1986 AAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAGATGAGACGTTGCTGGTCTGGGGG 2045 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || ||||| || | || |||||| |||| | ||||| || || || Sbjct 2046 GATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGACGCCTCGAC 2105 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || ||||| || ||||| || ||||| |||||||| Sbjct 2106 CTCAAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2153 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| ||||| | || ||||||||| || || ||||| || || ||||| || || | Sbjct 1408 TCCTCCTCTCAACCTCAACACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGA 1467 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || || ||| ||||||||||| || || | |||||||| || || || || || Sbjct 1468 AAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGTGG 1527 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | ||| |||||| | || | ||||| ||| || Sbjct 1528 GATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATCGTGTCGCTGGCTTCAAC 1587 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || ||||| | ||| || || || |||||||| Sbjct 1588 CTCAAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 1635 Score = 116 bits (128), Expect = 3e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || ||||| || ||||| ||||| || |||| | |||||| Sbjct 1192 ACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCC 1251 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||||| || || | ||||||||||||||||| || || || || ||||| Sbjct 1252 ATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGGATTCCTTCTTT 1311 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| || | || || | || | ||||| ||| ||| ||||| | || | Sbjct 1312 GTCCTG-AATCTTGGCCTTCACGTTCTCGATCGTGTCCGAAGCTTCGACTTCCAATGTGA 1370 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || ||||| || ||||| || || || |||||| Sbjct 1371 TTGTCTTTCCAGTCAACGTTTTCACGAAGATTTGCATT 1408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385170223230912