Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq9793 96.9 3e-15 seq6048 86.0 6e-12 >seq9793 Length=2388 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| || ||||| ||| | || | | | || ||||| Sbjct 1430 AAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCA-TCTTCGAG 1488 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| | || | | ||| ||||| || ||||| ||||||||||| ||| Sbjct 1489 TTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGAT 1548 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||||| | ||| | ||||||| ||| || || || | |||| ||| || || Sbjct 1549 CTTTGCCTTGACATTCTCGATCGTGTCGCTGGCTTCAACCTCAAGAGTGATGGTCTTTCC 1608 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 1609 AGTCAGGGTCTTCACGAAGATCTGCAT 1635 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 |||||||| || || || |||||||||||||| |||||| ||||| | || | Sbjct 1801 CGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATG 1860 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 |||||| ||| || || || | ||||| ||| ||||| || |||||||| ||||||||| Sbjct 1861 GTGTCGCTGGCTTCGACCTCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTGACGAAAATC 1920 Query 133656 TGCAT 133660 ||||| Sbjct 1921 TGCAT 1925 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || | ||| | | | || || || || || || Sbjct 983 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCA-TCTTCAAGTTGTTTTCC 1041 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| || |||||||| || || || ||||||||||| |||||| ||| Sbjct 1042 GGCGAAGATGAGACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTT 1101 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | || || | | ||| || || | ||||| ||| ||||| || || || Sbjct 1102 CACGTTCTCGATGGTATCAGAAGCCTCGACCTCCAAGGTGATGGTCTTGCCAGTGAGGGT 1161 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1162 CTTAACGAAGATCTGCAT 1179 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 ||||| || |||||||| || ||||| ||||||||||| |||||| ||||| | Sbjct 2023 ATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTT 2082 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | ||||||| | ||| || || | |||| ||| |||||||||| || || || Sbjct 2083 TCGATGGTGTCGGACGCCTCGACCTCAAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACA 2142 Query 133650 AAAATCTGCAT 133660 || |||||||| Sbjct 2143 AAGATCTGCAT 2153 >seq6048 Length=7890 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || || || ||||| || ||||| || ||||||||||| |||||| | | Sbjct 1909 CCTGCGAAGATCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGTTC 1850 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | |||| || ||| | ||||| || || | ||| | ||||| || || || Sbjct 1849 TTGACATTGTCAATGGTATCGCTTGGCTCTACCTCCAAGGTAATAGTTTTACCCGTGAGG 1790 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| |||||||| ||||| Sbjct 1789 GTTTTCACGAAAATTTGCAT 1770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483357761927680