Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq10254 107 2e-18 seq9793 107 2e-18 seq8142 102 8e-17 seq6048 87.8 2e-12 >seq10254 Length=5829 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||||| |||||||| |||||||||||| | |||| || || || || || Sbjct 5252 GTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCCAGTTG 5193 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || |||| ||| ||||| || || || ||||| || || ||||| || || Sbjct 5192 CTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTT 5133 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || | |||||| ||||| || | || ||||| || ||||| Sbjct 5132 GGCTTTCACATTCTCGATGGTGTCGCTTCCCTCCACCTCCAAGGTGATGGTCTTGCCGGT 5073 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || |||||||||||||| || Sbjct 5072 CAAAGTCTTGACGAAAATTTGCATCTT 5046 >seq9793 Length=2388 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| | | |||||| | || || || |||||||| || |||||||||||| Sbjct 1407 TTCCTCCTCTCAACCTCAACACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGG 1466 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || | || ||||| ||||| || || || ||||| | ||| || || || | Sbjct 1467 AAAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGTG 1526 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || ||| ||||| || | |||||| | ||| | Sbjct 1527 GGATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATCGTGTCGCTGGCTTCAA 1586 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| ||||| || || || | || || ||||| || ||||| Sbjct 1587 CCTCAAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 1635 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||||| |||||||| ||||||||||| | |||| | || || | ||| Sbjct 1204 GTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCTTCCAACTG 1263 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || || || ||||| | |||||||| || || || |||||||| || ||||| || Sbjct 1264 TTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGAATCTT 1323 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | ||||| || | ||| || || | || || || || || || Sbjct 1324 GGCCTTCACGTTCTCGATCGTGTCCGAAGCTTCGACTTCCAATGTGATTGTCTTTCCAGT 1383 Query 134690 TAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| ||||| ||||||||| Sbjct 1384 CAACGTTTTCACGAAGATTTGCATT 1408 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| | || | ||| | || || ||||||||||| || ||||| || || Sbjct 1925 TTCCACCTCTCAACCGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAATCAG 1984 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||| || || | ||||| || ||||| || | ||| ||||| || || | Sbjct 1985 AAAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAGATGAGACGTTGCTGGTCTGGGG 2044 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || || || ||||| || | |||||||||| || | Sbjct 2045 GGATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGACGCCTCGA 2104 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| ||||| || ||||| || || || || || || ||||| Sbjct 2105 CCTCAAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2153 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||||||||||||||| || || |||||||| || || || || || Sbjct 1783 TTACCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 1842 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| || | |||||| | ||| || || | || ||||| || || || Sbjct 1843 GCCTTGACATTTTCGATGGTGTCGCTGGCTTCGACCTCCAAGGTGATGGTCTTGCCAGTG 1902 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | |||||| |||||||| |||||| Sbjct 1903 AGAGTTTTGACGAAAATCTGCATT 1926 >seq8142 Length=52432 Score = 102 bits (112), Expect = 8e-17 Identities = 256/380 (67%), Gaps = 12/380 (3%) Strand=Plus/Minus Query 8836 GGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATG 8895 |||| |||||||| || | || ||| |||||||||||| | ||||| || || || Sbjct 5446 GGTTGCCGCAATTCCCTCCTCGTCGCTCCGATGCCCACCGCCTCCACTGCCCAGATCCTG 5387 Query 8896 GGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCC 8955 || || ||||| ||||||| || | |||| |||| ||||| |||| ||||| Sbjct 5386 GGCAATAACGAGGCCTTTGAACCCTACACCTCCAACATGTACACGAGAAGAGTGACCAAG 5327 Query 8956 GGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATCG-AAGCGGGCGTT-- 9012 |||||||| | | || | |||||| | || || ||||||| || ||| || | Sbjct 5326 GGCGATTTCCAGGTCGTCAACCAACATTTGGTCCGTGATTTGATCGCAATCGGCCGATGG 5267 Query 9013 TACGACGACAAAATGCGCGATGCCATCGTGGAAGCCAACGGCAGCGTTCAGAACATTGAC 9072 || | |||| ||| ||| |||| || || |||||| |||||||||||| ||| Sbjct 5266 AACAAGGACATGATG---TATGACATCATGCGAGACAACGGAAGCGTTCAGAAC-TTG-- 5213 Query 9073 GCGGTGCCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGCA-AAGCAC 9131 | |||| | | | || ||| | || || || || |||||||| || || | || Sbjct 5212 GATCTGCCGGAGGAATTGAAGGAGATCTACAAGACTGTCTGGGAAATCAAACAGTTGGAC 5153 Query 9132 GCTGATCGGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGT 9191 || | | ||||| || || |||| | || |||||||| || || || | || || Sbjct 5152 -TTGGTGCGAATGGCCGCCGACCGAGGACCGTTCATTGATCAAAGCCAGTCGCTGAATGT 5094 Query 9192 GTTCGTAGC-CGCACCAACT 9210 ||| | || || |||||| Sbjct 5093 CTTCATTGCAAGCCCCAACT 5074 >seq6048 Length=7890 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 ||||| || |||| ||| |||||||| || || || ||||| || ||||| || || | Sbjct 1909 CCTGCGAAGATCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGTTC 1850 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| ||| | || ||| | || || || | ||||| |||||||| || | Sbjct 1849 TTGACATTGTCAATGGTATCGCTTGGCTCTACCTCCAAGGTAATAGTTTTACCCGTGAGG 1790 Query 134694 GTTTTAACGAAAATTTGCATTTT 134716 ||||| ||||||||||||||||| Sbjct 1789 GTTTTCACGAAAATTTGCATTTT 1767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505332496048640