Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4549 96.9 4e-15 seq8142 84.2 3e-11 >seq4549 Length=14857 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || ||||||||||| || || ||||| | || ||||| || | ||||| || || Sbjct 13819 CCGACCGCATCAATTTCGTCGATGAACAAGATGCATGGGGAGTTCTTTCGGGCCATGGCA 13760 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || | ||| || || ||| || || |||||||||||||| || | || | || | Sbjct 13759 AACATATCACGGACTCTTGCGGGGCCAACACCAACAAACATTTCGAGGAATTCTGATCCG 13700 Query 11744 GAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11802 ||| || | |||||| |||||||| | ||| || ||| | ||| ||| || |||||||| Sbjct 13699 GAGACAGT-GATGAAGGGGACATTGGCTTCTCCGGCGGTTGCTTTGGCCAGAAGGGTCTT 13641 Query 11803 TCCCGTACCTGG 11814 || |||||||| Sbjct 13640 ACCAGTACCTGG 13629 >seq8142 Length=52432 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 111820 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTA 111877 || |||||||| | ||||| || || || || || ||||| | |||||| ||| | Sbjct 7176 ATTATGGATGTTGAGACCAATTCCGCCGGCGCATTTCGAGATCATAGCGCAC-CTCT-TG 7233 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || ||||| || | ||| || || || ||| | ||||||||| || ||| Sbjct 7234 AGCGTGGTGTAGATTCCATCGATGGAATCGTCGGCCATGGTCAGAAGGAAGCAGCTAGAC 7293 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 | ||| || |||| ||||| |||||||||||||| || || ||||| | ||| || Sbjct 7294 AGCTGGGGAATTGGAGTACCGGCATTGAAGAGGGTGGGAGTGGCGTGGGTAAACCAACGC 7353 Query 111998 TGGGACATCTTGTCGTATGTCT 112019 | ||||||| || ||| |||| Sbjct 7354 TCGGACATCAAGTTGTAGGTCT 7375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627950104627200