Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq8142 96.9 4e-15 seq4549 96.9 4e-15 >seq8142 Length=52432 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769 ||||| || |||| || ||||| | | ||| ||| | ||| || || || ||| Sbjct 6315 GCGATGGATGCCAAGTTGCACACCGCGACCTCGTCCGGCGAGGAGTATTCGATGATCTCC 6374 Query 118770 GTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 118829 ||||||||||| || | ||| ||||||||||| || | ||||| |||||| ||| || Sbjct 6375 GTGCACAAGTTGGAGCACTTGATGGTGCCCAAATTTTGCTGATTCGACTTTCGGTTGCAA 6434 Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 ||||||||| | ||| || ||| || || || ||||||||||| || || | | Sbjct 6435 TGATCCTTGTAGACCATATAAGGCAATCCAGTTTCGCATTGGGACTTGATGATTGCTTGC 6494 Query 118890 CAGACATC 118897 |||| ||| Sbjct 6495 CAGAGATC 6502 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 119298 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 119357 ||||||| | |||||| || || || || || ||||| |||||| | |||| || Sbjct 7180 TGGATGTTGAGACCAATTCCGCCGGCGCATTTCGAGATCATAGCGCACCTCTTGAGCGTG 7239 Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGA 119417 |||||| |||||||| || || | | | | ||||||||||| |||| || Sbjct 7240 GTGTAGATTCCATCGATGGAATCGTCGGCCATGGTCAGAAGGAAGCAGCTAGACAGCTGG 7299 Query 119418 GGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGAC 119477 || | || ||||| || |||||||| || || || |||||| | ||| || | |||| Sbjct 7300 GGAATTGGAGTACCGGCATTGAAGAGGGTGGGAGTGGCGTGGGTAAACCAACGCTCGGAC 7359 Query 119478 ATCTTGTCGTAGGTCT 119493 ||| || |||||||| Sbjct 7360 ATCAAGTTGTAGGTCT 7375 >seq4549 Length=14857 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA 14296 ||||| || |||||||| |||||||| | ||| ||||| || | ||||| | || Sbjct 13819 CCGACCGCATCAATTTCGTCGATGAACAAGATGCATGGGGAGTTCTTTCGGGCCATGGCA 13760 Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 14356 || ||||| || ||||| || || ||||| |||||||| || | || | | || Sbjct 13759 AACATATCACGGACTCTTGCGGGGCCAACACCAACAAACATTTCGAGGAATTCTGATCCG 13700 Query 14357 GA-ACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 14415 || ||| || ||||||||||| || | ||| || ||| | ||| ||| || |||||||| Sbjct 13699 GAGACAGTG-ATGAAGGGGACATTGGCTTCTCCGGCGGTTGCTTTGGCCAGAAGGGTCTT 13641 Query 14416 CCCCGTCCCTGG 14427 || || ||||| Sbjct 13640 ACCAGTACCTGG 13629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618354556049920