Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4549 100 3e-16 seq8142 84.2 3e-11 >seq4549 Length=14857 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 9696 TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTT 9755 |||| || |||||||| || || ||||| | ||||||||| || | || || | Sbjct 13821 TTCCGACCGCATCAATTTCGTCGATGAACAAGATGCATGGGGAGTTCTTTCGGGCCATGG 13762 Query 9756 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 9815 |||| | ||| || || | || ||| |||||||||||||| || | || | || Sbjct 13761 CAAACATATCACGGACTCTTGCGGGGCCAACACCAACAAACATTTCGAGGAATTCTGATC 13702 Query 9816 CGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874 |||| ||| || |||||||||||||| | ||| || || | ||| ||| ||||| ||| Sbjct 13701 CGGAGACAGTG-ATGAAGGGGACATTGGCTTCTCCGGCGGTTGCTTTGGCCAGAAGGGTC 13643 Query 9875 TTACCCGTACCTGG 9888 ||||| |||||||| Sbjct 13642 TTACCAGTACCTGG 13629 >seq8142 Length=52432 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 104286 AGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATG 104345 |||| ||| || ||||||| | || ||| | ||||| || || ||||||||||||| Sbjct 7375 AGACCTACAACTTGATGTCCGAGCGTTGGTTTACCCACGCCACTCCCACCCTCTTCAATG 7316 Query 104346 CTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAA 104405 | ||||| |||| ||||| |||| || ||||||||| | ||| || || || | Sbjct 7315 CCGGTACTCCAATTCCCCAGCTGTCTAGCTGCTTCCTTCTGACCATGGCCGACGATTCCA 7256 Query 104406 TCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGCTGGGGG 104463 || | || ||||| || || | ||| |||||| | ||||| || || || || || Sbjct 7255 TCGATGGAATCTACACCACGCTCA-AGAG-GTGCGCTATGATCTCGAAATGCGCCGGCGG 7198 Query 104464 TATTGGGATGCACATCCATGAT 104485 ||||| | |||||||| || Sbjct 7197 AATTGGTCTCAACATCCATAAT 7176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583184742791680