Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq8142 163 3e-35 >seq8142 Length=52432 Score = 163 bits (180), Expect = 3e-35 Identities = 454/686 (66%), Gaps = 24/686 (3%) Strand=Plus/Minus Query 20057 TACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTC 20116 ||||| | ||| | |||||||||||| ||| | ||||| || || |||| ||||| ||| Sbjct 5764 TACCCCATCGAAGAGGCGCGCAAGTCCAATCTCCGCCATCGTCCCATCGGAATCGGAGTC 5705 Query 20117 CAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATC-CCAAGGC--- 20172 ||||| |||||||||| || ||| || | | || | ||| || | | |||||| Sbjct 5704 CAGGGTCTGGCCGACGCCTTTATGCTGATGAGACTGCCGTTC-ACCAGCGACAAGGCCAA 5646 Query 20173 GCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTG 20232 || | ||||||| ||||||||| || | ||||| |||||||| || || || Sbjct 5645 GCTC---CTCAACATTCAGATCTTCGAGACCATCTACCATGCGGCCCTGGAGGCCTCATG 5589 Query 20233 CGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGG 20292 ||| | ||||| ||| || || |||||||| | | |||| || || |||| | || Sbjct 5588 CGAGTTGGCCAAGGAGTTTGGACCCTACGAGACCTACGAGGGCTCTCCAATGTCCAAAGG 5529 Query 20293 TATCCTCCAGCCGGACATGTGGGGCGT------CACTGA-GAATGAGTTTTGGAGCGCCC 20345 || || || ||| | ||||| || ||| || || | | ||| ||| Sbjct 5528 CCAGCTTCAACCCGACCTCTGGGGTGTAAAACCCACAGATCTCTGGGACTGGGA-TTCCC 5470 Query 20346 TCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGA 20405 ||| || || || | | || ||||| || | |||||||| || ||||| | Sbjct 5469 TCAGGGCCAAGGTCGCCAAATATGGTTGCCGCAATTCCCTCCTCGTCGCTCCGATGCCCA 5410 Query 20406 CCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACA 20465 ||||||| || ||||||||| |||| || |||||||| || || || ||||| |||||| Sbjct 5409 CCGCCTCCACTGCCCAGATCCTGGGCAATAACGAGGCCTTTGAACCCTACACCTCCAACA 5350 Query 20466 TCTACTTGCGTCGTACACTGGCC---GGTGAGTTCGTCATGGTAAACAAGCACCTGGTCC 20522 | ||| | | | | || || || || ||| | || ||| | || |||||| Sbjct 5349 TGTACACG---AGAAGAGTGACCAAGGGCGATTTCCAGGTCGTCAACCAACATTTGGTCC 5293 Query 20523 GCGACTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATGAAATTGTCCGAGCCG 20582 | || ||| |||| ||| | || | | |||| || | |||| | Sbjct 5292 GTGATTTGATCGCAATCGGCCGATGGAACAAGGACATGATGTATGACATCATGCGAGACA 5233 Query 20583 GCGGGAGCGTCCAGGCATTGGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTAT 20642 ||| ||||| ||| |||||| | || || | | ||||| || |||| ||| || | Sbjct 5232 ACGGAAGCGTTCAGAACTTGGATCTGCCGGAGGAATTGAAGGAGATCTACAAGACTGTCT 5173 Query 20643 GGGAAATCCCACAGAAGAGCATCAT-CGACATGGCGGCCGATCGCGGCGCCTACATCGAC 20701 |||||||| |||| | | | | ||| ||||| ||||| || || | | ||| || Sbjct 5172 GGGAAATCAAACAGTTGGACTTGGTGCGA-ATGGCCGCCGACCGAGGACCGTTCATTGAT 5114 Query 20702 CAGTCCCAGTCGCTCAATGTCTTCAT 20727 || ||||||||| ||||||||||| Sbjct 5113 CAAAGCCAGTCGCTGAATGTCTTCAT 5088 Score = 86.0 bits (94), Expect = 7e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 || || || |||| || || ||||| |||||| ||||||||| |||||| || Sbjct 7192 CCAATTCCGCCGGCGCATTTCGAGATCATAGCGCACCTCTTGAGCGTGGTGTAGATTCCA 7251 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTA 79773 ||||| || ||||| ||| | | ||||||||||| |||| ||| || | ||| Sbjct 7252 TCGATGGAATCGTCGGCCATGGTCAGAAGGAAGCAGCTAGACAGCTGGGGAATTGGAGTA 7311 Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 ||||| ||||||||||| || || ||||| || || Sbjct 7312 CCGGCATTGAAGAGGGTGGGAGTGGCGTGGGTAAA 7346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548453272366080