Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq8142 91.5 2e-13 >seq8142 Length=52432 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 55163 AATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATC 55222 ||||||||||| | |||| ||||||||||||||| ||||| || || ||||||| ||| Sbjct 5770 AATTACTACCCCATCGAAGAGGCGCGCAAGTCCAATCTCCGCCATCGTCCCATCGGAATC 5711 Query 55223 GGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTC 55270 || || ||||| |||||||| ||| ||| || | || |||| ||| Sbjct 5710 GGAGTCCAGGGTCTGGCCGACGCCTTTATGCTGATGAGACTGCCGTTC 5663 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG--AATCACCCTCAGATGTCGA 53330 ||||| |||||||| || ||||| ||||| || ||||| ||| ||| || |||| | Sbjct 7346 TTTACCCACGCCACTCCCACCCTCTTCAATGCCGGTACTCCAATTCCCC--AGCTGTCTA 7289 Query 53331 GCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGG 53390 |||||||||| || | ||| || || || ||||| || |||||| ||||||||| Sbjct 7288 GCTGCTTCCTTCTGACCATGGCCGACGATTCCATCGATGGAATCTACACCACGCTCAAGA 7229 Query 53391 AGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTG 53450 ||| || ||||| || || | || || || ||| || || | || |||||| Sbjct 7228 GGTGCGCTATGATCTCGAAATGCGCCGGCGGAATTGGTCTCAACATCCATAATATCCGTG 7169 Query 53451 CGAACGG 53457 |||| || Sbjct 7168 CGAAGGG 7162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547144643033600