Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq10254 181 1e-40 seq9793 174 2e-38 seq6048 105 8e-18 seq5271 102 9e-17 >seq10254 Length=5829 Score = 181 bits (200), Expect = 1e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | ||||||||||| || || | ||||| ||| | | Sbjct 5049 ATGCAAATTTTCGTCAAGACTTTGACCGGCAAGACCATCACCTTGGAGGTGGAGGGAAGC 5108 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| |||| || || || || ||||||||||| ||||| ||||||||| Sbjct 5109 GACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAG 5168 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||| |||||||| ||||||| ||| ||||| | ||||| || Sbjct 5169 CAACGTCTGATCTTCGCTGGAAAGCAACTGGAGGATGGTCGCACCCTGTCCGACTACAAC 5228 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||||| ||||| || || | ||| | |||||||| |||||| Sbjct 5229 ATCCAAAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTTCGTGGTGGA 5276 Score = 122 bits (134), Expect = 1e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| || ||||| ||||| || || | ||||||||| | Sbjct 5276 AATGCAAATCTTTGTGAAGACCCTCACCGGGAAGACCATCACCTTGGAGGTTGAGGCTTC 5335 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | || ||||||| || || ||||||||||| |||||||| |||||||| Sbjct 5336 TGATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 5395 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| || | || || || |||||| Sbjct 5396 GCAACGCTTGATCTTCGCCGGTAAG 5420 Score = 122 bits (134), Expect = 1e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| || ||||| ||||| || || | ||||||||| | Sbjct 5586 AATGCAAATCTTTGTGAAGACCCTCACCGGGAAGACCATCACCTTGGAGGTTGAGGCTTC 5645 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | || ||||||| || || ||||||||||| |||||||| |||||||| Sbjct 5646 TGATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 5705 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| || | || || || |||||| Sbjct 5706 GCAACGCTTGATCTTCGCCGGTAAG 5730 >seq9793 Length=2388 Score = 174 bits (192), Expect = 2e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || | ||||| ||| | | Sbjct 1179 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGGCTTCT 1120 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || ||||||| || || ||||||||||| |||||||| ||||||||| Sbjct 1119 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 1060 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || || || ||||| || |||| || || || | ||||| || Sbjct 1059 CAACGTCTCATCTTCGCCGGAAAACAACTTGAAGATGGCCGCACTCTCTCTGACTACAAC 1000 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| |||||||| ||||| ||| | |||||||| ||||| ||| Sbjct 999 ATCCAGAAGGAGTCCACTCTCCATCTGGTCCTCCGTCTTCGTGGTGGTCAA 949 Score = 156 bits (172), Expect = 5e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | ||||||||||| || ||||||||||| ||| | Sbjct 2153 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACTCTTGAGGTCGAGGCGTCC 2094 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | ||||| || || ||||||||||| || || || ||||||||| Sbjct 2093 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCAGACCAG 2034 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| || || ||| | || |||| | ||||| | || ||||| Sbjct 2033 CAACGTCTCATCTTTGCCGGAAAACAATTGGAAGATGGAAGAACCCTTTCTGATTATAAC 1974 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 |||| |||||||||||||| ||| Sbjct 1973 ATCCAGAAGGAATCCACTCTCCAT 1950 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || |||||||||||||| | | Sbjct 1635 ATGCAGATCTTCGTGAAGACCCTGACTGGAAAGACCATCACTCTTGAGGTTGAAGCCAGC 1576 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || || || |||||||| ||||| || |||||||| Sbjct 1575 GACACGATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAA 1516 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || || || || |||||||| |||| ||||| || | ||||| || Sbjct 1515 CAGAGATTGATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTTCCGACTACAAC 1456 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| |||||||| || || ||| | || ||| Sbjct 1455 ATCCAGAAGGAATCTACACTCCATTTGGTGTTG 1423 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || ||| | || || ||||| || || | || || || | Sbjct 1408 AATGCAAATCTTCGTGAAAACGTTGACTGGAAAGACAATCACATTGGAAGTCGAAGCTTC 1349 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || ||||||| || ||||||||||| || ||||| || ||||| || Sbjct 1348 GGACACGATCGAGAACGTGAAGGCCAAGATTCAGGACAAAGAAGGAATCCCCCCAGATCA 1289 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | | || || || || || || | || |||| || ||||| | ||||| || Sbjct 1288 GCAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGGCGCACCCTCTCGGACTACAA 1229 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| || || | ||| | |||||||| ||||| Sbjct 1228 CATCCAAAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTTCGTGGTGG 1181 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || ||||| || || || |||||||| || || | ||||| || | | Sbjct 1926 AATGCAGATTTTCGTCAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAAGCCAG 1867 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | |||| | ||||| || || ||||||||||| || ||||| ||||| || Sbjct 1866 CGACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 1807 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||||| | || |||||||||||| Sbjct 1806 GCAGCGTTTGATCTTTGCTGGTAAG 1782 >seq6048 Length=7890 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || || || || || |||||||| | ||||| ||| || | Sbjct 1769 AATGCAAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACCTTGGAGGTAGAGCCAAG 1828 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| ||| | ||| || || || |||||||| |||||||||||||| || Sbjct 1829 CGATACCATTGACAATGTCAAGAACAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCA 1888 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| || || || |||| Sbjct 1889 GCAACGTCTGATCTTCGCAGGTA 1911 >seq5271 Length=37008 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 |||| |||||||||||||||||| || ||||||||||| || || ||||||||||| ||| Sbjct 21890 TCGATGATTTCCGTGCACAAATTCGAGGACTTAATTGTTCCGAGATTTTTCTGGTTCGAC 21949 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAG 81033 || ||||||| ||||| |||||| Sbjct 21950 TTTTCGTTGCATGCGTCTTTGTAG 21973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570236031523840