Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq9793 136 3e-27 seq10254 113 4e-20 >seq9793 Length=2388 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||||||| | || |||||||| || || ||||| Sbjct 2153 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACTCTTGAGGTCGAGGCGTCC 2094 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| ||||| || || || || || Sbjct 2093 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCAGACCAG 2034 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||| |||||||||||||| | ||| |||| ||||| ||| Sbjct 2033 CAACGTCTCATCTTTGCCGGAAAACAATTGGAAGATGGAAGAACCCTTTCTGATTATAAC 1974 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | |||||||| | || ||| | ||||| || Sbjct 1973 ATCCAGAAGGAATCCACTCTCCATTTGGTGCTCCGGTTGAGAGGTGGAAT 1924 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||| || ||| | || || | ||||| ||| | || Sbjct 1407 ATGCAAATCTTCGTGAAAACGTTGACTGGAAAGACAATCACATTGGAAGTCGAAGCTTCG 1348 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || || ||||| ||||||||||| || || || ||||| Sbjct 1347 GACACGATCGAGAACGTGAAGGCCAAGATTCAGGACAAAGAAGGAATCCCCCCAGATCAG 1288 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | |||||| ||||| |||||||| | ||| | || || |||||| Sbjct 1287 CAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGGCGCACCCTCTCGGACTACAAC 1228 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | || ||||| | ||| | || ||||| || Sbjct 1227 ATCCAAAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTTCGTGGTGGTAT 1178 >seq10254 Length=5829 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| ||||||||||| | || || | || ||||| | Sbjct 5049 ATGCAAATTTTCGTCAAGACTTTGACCGGCAAGACCATCACCTTGGAGGTGGAGGGAAGC 5108 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| || || |||||||| || ||||| || || || || Sbjct 5109 GACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAG 5168 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || || ||| |||| || || ||| | ||||| |||||| Sbjct 5169 CAACGTCTGATCTTCGCTGGAAAGCAACTGGAGGATGGTCGCACCCTGTCCGACTACAAC 5228 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | || ||||| | ||| | || ||||| || Sbjct 5229 ATCCAAAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTTCGTGGTGGAAT 5278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434861686640640