Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq9793 176 1e-38 seq10254 159 8e-34 seq6048 98.7 2e-15 >seq9793 Length=2388 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || || ||||||||||| || |||||||| || || | || || Sbjct 958 ACGAAGACGGAGGACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGT 1017 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || || || || |||||||| || ||||| ||||| || |||| ||| Sbjct 1018 GCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATTCC 1077 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| |||||||| |||||||| ||||| || ||||| | Sbjct 1078 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGCCTCGACCTCCAA 1137 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| ||||| || || | |||||| Sbjct 1138 GGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 1179 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || |||||||| || || |||||||||||||| | |||||| ||||||||||||| || Sbjct 1951 TGGAGAGTGGATTCCTTCTGGATGTTATAATCAGAAAGGGTTCTTCCATCTTCCAATTGT 2010 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| || ||||| ||||| || || | |||||||||||||||||||| Sbjct 2011 TTTCCGGCAAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGGATCTTG 2070 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || |||||||||||||| || || ||||| |||||||| ||||| || || Sbjct 2071 GCCTTGACATTTTCGATGGTGTCGGACGCCTCGACCTCAAGAGTGATGGTCTTGCCGGTC 2130 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| | |||||| Sbjct 2131 AAGGTCTTCACAAAGATCTGCAT 2153 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | ||| || |||||||| ||||||||||| || |||| ||||| Sbjct 1186 ACGAAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGT 1245 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||| || || |||||||| | | ||| || || || || | ||| Sbjct 1246 GCGCCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGGATTCC 1305 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| |||||||| ||||| |||||||| ||||| ||||| || ||| || || | Sbjct 1306 TTCTTTGTCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCCGAAGCTTCGACTTCCAA 1365 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| |||||||| || | || || || || | |||||| Sbjct 1366 TGTGATTGTCTTTCCAGTCAACGTTTTCACGAAGATTTGCATT 1408 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || || || || |||||||| || || | ||| || | |||||||| || || Sbjct 1433 TGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCGAGTTGT 1492 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| | | |||||||| || || | |||||||||||| ||||||||| Sbjct 1493 TTTCCGGCGAAGATCAATCTCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTT 1552 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || ||||| ||||| | ||||||||| |||||||| |||||||| || Sbjct 1553 GCCTTGACATTCTCGATCGTGTCGCTGGCTTCAACCTCAAGAGTGATGGTCTTTCCAGTC 1612 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | |||||| Sbjct 1613 AGGGTCTTCACGAAGATCTGCAT 1635 Score = 100 bits (110), Expect = 7e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | || || || || || |||| |||||||||||||||||||| Sbjct 1782 CTTACCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTT 1841 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || |||||||||||||| | ||| ||||| | ||||| ||||| || || Sbjct 1842 GGCCTTGACATTTTCGATGGTGTCGCTGGCTTCGACCTCCAAGGTGATGGTCTTGCCAGT 1901 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 |||||| || || || | ||||||| Sbjct 1902 GAGAGTTTTGACGAAAATCTGCATT 1926 >seq10254 Length=5829 Score = 159 bits (176), Expect = 8e-34 Identities = 173/228 (76%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | ||| || |||||||| ||||||||||| || || | ||||| Sbjct 5270 ACGAAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAGGGT 5211 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| ||||| ||||| || |||||||| || ||||| ||||| || |||| || Sbjct 5210 GCGACCATCCTCCAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGAATGCC 5151 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 |||||||| |||||||| |||||| || ||||||||||| |||| || ||||| Sbjct 5150 CTCCTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTC---GCTTCCCTCCACCTC 5094 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | ||||| ||||| || || | |||||| || || | ||||| || Sbjct 5093 CAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAAATTTGCATCTT 5046 Score = 131 bits (144), Expect = 4e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | |||||| ||||| || |||| ||||||||||||||||||||| Sbjct 5420 CTTACCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTT 5361 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||||| |||||||| ||||| |||||||| | ||||| ||||| || || Sbjct 5360 GGCCTTCACGTTCTCGATGGTATCAGAAGCCTCAACCTCCAAGGTGATGGTCTTCCCGGT 5301 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||| ||||| ||||| | |||||| Sbjct 5300 GAGGGTCTTCACAAAGATTTGCATT 5276 Score = 131 bits (144), Expect = 4e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | |||||| ||||| || |||| ||||||||||||||||||||| Sbjct 5730 CTTACCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTT 5671 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||||| |||||||| ||||| |||||||| | ||||| ||||| || || Sbjct 5670 GGCCTTCACGTTCTCGATGGTATCAGAAGCCTCAACCTCCAAGGTGATGGTCTTCCCGGT 5611 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||| ||||| ||||| | |||||| Sbjct 5610 GAGGGTCTTCACAAAGATTTGCATT 5586 >seq6048 Length=7890 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||||||||| || ||||| || || ||||||| |||||||||||| |||||||| | Sbjct 1909 CCTGCGAAGATCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGTTC 1850 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || ||||| || |||| || ||||| | || || || || |||||| Sbjct 1849 TTGACATTGTCAATGGTATC---GCTTGGCTCTACCTCCAAGGTAATAGTTTTACCCGTG 1793 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || | |||||||| Sbjct 1792 AGGGTTTTCACGAAAATTTGCATTTT 1767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158997067743680