Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq10254 168 2e-36 seq9793 143 6e-29 seq7791 113 1e-19 seq7790 113 1e-19 seq6048 91.5 4e-13 >seq10254 Length=5829 Score = 168 bits (186), Expect = 2e-36 Identities = 175/228 (77%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | |||||| ||||| || ||||||| ||||| |||| || || Sbjct 5270 ACGAAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAGGGT 5211 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || || ||||| ||||||||||| || ||||| ||||| || ||||| || Sbjct 5210 GCGACCATCCTCCAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGAATGCC 5151 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTT---TCCACGTC 225668 ||||||||||||||||| |||||| ||||||||||| | || ||||| || Sbjct 5150 CTCCTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTC---GCTTCCCTCCACCTC 5094 Query 225669 TAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| |||||||| |||||||| || | ||| | |||||| || Sbjct 5093 CAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAAATTTGCATCTT 5046 Score = 91.5 bits (100), Expect = 4e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || |||||||| | ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 5420 CTTACCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTT 5361 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||| |||||||| || || | || || || || ||||| ||||| || || Sbjct 5360 GGCCTTCACGTTCTCGATGGTATCAGAAGCCTCAACCTCCAAGGTGATGGTCTTCCCGGT 5301 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 | || || | || | ||||||| Sbjct 5300 GAGGGTCTTCACAAAGATTTGCATT 5276 Score = 91.5 bits (100), Expect = 4e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || |||||||| | ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 5730 CTTACCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTT 5671 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||| |||||||| || || | || || || || ||||| ||||| || || Sbjct 5670 GGCCTTCACGTTCTCGATGGTATCAGAAGCCTCAACCTCCAAGGTGATGGTCTTCCCGGT 5611 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 | || || | || | ||||||| Sbjct 5610 GAGGGTCTTCACAAAGATTTGCATT 5586 >seq9793 Length=2388 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| || ||||||||||| || || |||| ||||| || | | ||| Sbjct 958 ACGAAGACGGAGGACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGT 1017 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || || || || |||||||| || ||||| ||||| || ||||| || Sbjct 1018 GCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATTCC 1077 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| |||||| |||||||| || || | || || || || Sbjct 1078 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGCCTCGACCTCCAA 1137 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | ||| | ||||| Sbjct 1138 GGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 1179 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 |||||||||||||| || |||| || ||||| | | ||||| |||||||| | || Sbjct 1951 TGGAGAGTGGATTCCTTCTGGATGTTATAATCAGAAAGGGTTCTTCCATCTTCCAATTGT 2010 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| || ||||| ||||| || || |||||||||||||| |||||||| Sbjct 2011 TTTCCGGCAAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGGATCTTG 2070 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| |||||||||||| || | || || || | ||||| |||||||| ||| Sbjct 2071 GCCTTGACATTTTCGATGGTGTCGGACGCCTCGACCTCAAGAGTGATGGTCTTGCCGGTC 2130 Query 225691 AAAGTTTT 225698 || || || Sbjct 2131 AAGGTCTT 2138 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| || ||||| || |||| ||||| |||| | ||| | |||||||| || || Sbjct 1433 TGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCGAGTTGT 1492 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | || |||||||| || || || ||||||||||||||||||||| Sbjct 1493 TTTCCGGCGAAGATCAATCTCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTT 1552 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||||| ||||| || ||| || || | ||||| ||||| || ||| Sbjct 1553 GCCTTGACATTCTCGATCGTGTCGCTGGCTTCAACCTCAAGAGTGATGGTCTTTCCAGTC 1612 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | ||||| Sbjct 1613 AGGGTCTTCACGAAGATCTGCAT 1635 Score = 104 bits (114), Expect = 6e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| ||||| | || || || || || ||||| ||||||||||| |||||||| Sbjct 1782 CTTACCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTT 1841 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| |||||||||||| || ||| || || || ||||| |||||||| || Sbjct 1842 GGCCTTGACATTTTCGATGGTGTCGCTGGCTTCGACCTCCAAGGTGATGGTCTTGCCAGT 1901 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 | |||||| | ||| | |||||| Sbjct 1902 GAGAGTTTTGACGAAAATCTGCATT 1926 >seq7791 Length=1711 Score = 113 bits (124), Expect = 1e-19 Identities = 196/284 (69%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATA 7503 |||||||| |||||||| | || || || ||||||||| || || ||| | || Sbjct 1387 TTATATTTTTTATTTGGTTTTTGGTCAGGAATATTAGGTACTAGTTTATCAATGGTGATT 1328 Query 7504 AGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAAC 7563 | || || |||||| || |||| | | || || ||| | ||| | || || Sbjct 1327 CGTTTTGAGTTAGCTAAACCTGGTTATT---TTTTAAGA---AATGGGCAATTATATAAT 1274 Query 7564 GTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATA 7623 ||| ||||| |||||||| || | |||||||| ||| | ||||| || ||| | Sbjct 1273 AGTATAATTACTGCGCATGCTTTATTAATGATTTTTTTTATAGTTATACCTTCTATAGTT 1214 Query 7624 GGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCA 7683 || ||||| || |||||| | || ||||| || | |||||||||||||| ||||| Sbjct 1213 GGAGGTTTTGGTAATTGAATAGTACCTTTGATATTAGGTGCTCCTGATATAAGGTTTCCG 1154 Query 7684 AGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | | || ||| |||| ||||| ||| |||| |||| ||||| Sbjct 1153 CGTTTAAATAATTTAAGATTTTGGTTATTACCTACTTCTTTATT 1110 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||||||||| |||||||||||||||| | ||| | ||||| | Sbjct 716 TTCAGGATGACCAAAAAATCAAAATAAATGTTGATAAATTAAAGGGTTTCCTCCTATTCT 775 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| |||||||| |||||||| || | ||||||||| Sbjct 776 TGGGTCAAAAAAAGAAGTATTAATGTTACGATCAGTTAA 814 >seq7790 Length=13226 Score = 113 bits (124), Expect = 1e-19 Identities = 196/284 (69%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATA 7503 |||||||| |||||||| | || || || ||||||||| || || ||| | || Sbjct 13086 TTATATTTTTTATTTGGTTTTTGGTCAGGAATATTAGGTACTAGTTTATCAATGGTGATT 13027 Query 7504 AGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAAC 7563 | || || |||||| || |||| | | || || ||| | ||| | || || Sbjct 13026 CGTTTTGAGTTAGCTAAACCTGGTTATT---TTTTAAGA---AATGGGCAATTATATAAT 12973 Query 7564 GTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATA 7623 ||| ||||| |||||||| || | |||||||| ||| | ||||| || ||| | Sbjct 12972 AGTATAATTACTGCGCATGCTTTATTAATGATTTTTTTTATAGTTATACCTTCTATAGTT 12913 Query 7624 GGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCA 7683 || ||||| || |||||| | || ||||| || | |||||||||||||| ||||| Sbjct 12912 GGAGGTTTTGGTAATTGAATAGTACCTTTGATATTAGGTGCTCCTGATATAAGGTTTCCG 12853 Query 7684 AGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | | || ||| |||| ||||| ||| |||| |||| ||||| Sbjct 12852 CGTTTAAATAATTTAAGATTTTGGTTATTACCTACTTCTTTATT 12809 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||||||||| |||||||||||||||| | ||| | ||||| | Sbjct 12415 TTCAGGATGACCAAAAAATCAAAATAAATGTTGATAAATTAAAGGGTTTCCTCCTATTCT 12474 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| |||||||| |||||||| || | ||||||||| Sbjct 12475 TGGGTCAAAAAAAGAAGTATTAATGTTACGATCAGTTAA 12513 >seq6048 Length=7890 Score = 91.5 bits (100), Expect = 4e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| || ||||| || || || ||||| |||||||||||||||||||| | | Sbjct 1909 CCTGCGAAGATCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGTTC 1850 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| || ||||| || | || || || || || || || || ||||| | Sbjct 1849 TTGACATTGTCAATGGTATCGCTTGGCTCTACCTCCAAGGTAATAGTTTTACCCGTGAGG 1790 Query 225694 GTTTTTATGAACACTTGCATTTT 225716 ||||| | ||| | ||||||||| Sbjct 1789 GTTTTCACGAAAATTTGCATTTT 1767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192371806279808