Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq9793 190 4e-43 seq10254 174 3e-38 seq10253 87.8 4e-12 >seq9793 Length=2388 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||||||| | ||| || || |||||||||||||||| Sbjct 952 ACCACCACGAAGACGGAGGACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1011 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||||||||| || |||||||| ||||| ||||| | |||||| ||||| || Sbjct 1012 GAGAGTGCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGG 1071 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||| || || ||| | ||||| || || ||||| ||||| Sbjct 1072 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGCCTCGAC 1131 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || || | ||||||||||| |||||||| Sbjct 1132 CTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 1179 Score = 167 bits (184), Expect = 5e-36 Identities = 152/192 (79%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || |||||||||||||| | ||| || |||||||| || |||||||| ||||| || Sbjct 1444 TTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAA 1503 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | |||||||| || || || |||||||||||||||||||| || || | Sbjct 1504 GATCAATCTCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATT 1563 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| ||||| || || |||||||| ||||| || |||| ||||| || Sbjct 1564 CTCGATCGTGTCGCTGGCTTCAACCTCAAGAGTGATGGTCTTTCCAGTCAGGGTCTTCAC 1623 Query 283088 GAATATCTGCAT 283099 ||| |||||||| Sbjct 1624 GAAGATCTGCAT 1635 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || || || |||| ||| | ||| ||| || |||||||| || |||| | Sbjct 1927 CCACCTCTCAACCGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAATCAGAA 1986 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||| || | |||||| ||||||||||| | |||||| ||||| || Sbjct 1987 AGGGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAGATGAGACGTTGCTGGTCTGGGGGG 2046 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| |||||||| |||||||| || || || | ||||| ||||| || || ||||| Sbjct 2047 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGACGCCTCGACC 2106 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || ||||| ||||| || || |||||||| Sbjct 2107 TCAAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2153 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||| || ||||||||||||||||| | Sbjct 1180 ACCACCACGAAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGA 1239 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| ||||| || | ||||| ||||| |||||||| | ||| || || || Sbjct 1240 GAGGGTGCGCCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGG 1299 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || ||||| || ||||| || || ||| | ||||| ||||||||||||||||| Sbjct 1300 GATTCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCCGAAGCTTCGAC 1359 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| | ||||| ||||| || ||||| || || ||||| || |||||| Sbjct 1360 TTCCAATGTGATTGTCTTTCCAGTCAACGTTTTCACGAAGATTTGCATT 1408 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||||||||| || || || ||||| || |||||||| |||||||| Sbjct 1783 TTACCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 1842 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | ||||| ||||| |||||||| || | ||||| ||||| || || Sbjct 1843 GCCTTGACATTTTCGATGGTGTCGCTGGCTTCGACCTCCAAGGTGATGGTCTTGCCAGTG 1902 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||| || ||||| ||||||||| Sbjct 1903 AGAGTTTTGACGAAAATCTGCATT 1926 >seq10254 Length=5829 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || | ||| || ||||||||||||||||| | Sbjct 5275 CCACCACGAAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAC 5216 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| ||||| || || || ||||||| |||||| ||||| ||| Sbjct 5215 AGGGTGCGACCATCCTCCAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGA 5156 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||| ||||| || | ||||| ||||| | || || Sbjct 5155 ATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTTCCCTCCACC 5096 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || | ||||| ||||| || ||||||||||| ||||| || ||||| ||| Sbjct 5095 TCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAAATTTGCATCTTC 5045 >seq10253 Length=56087 Score = 87.8 bits (96), Expect = 4e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 282876 CCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGC 282935 ||||| || |||| || || |||| || ||||||| | |||||| || | Sbjct 18851 CCACGAAGACGAAAAACTAGTTGTAGAGTAGAGCCTTTTTGAACGTTGTAATCTCTGACA 18910 Query 282936 GTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATA 282995 | |||| || || || ||| | ||| ||||| | |||||| | || |||| || Sbjct 18911 GGGCGGTGGTCGTCGAGCTGTCTTCCGTTGAAGATGAGACGTTGCTCTTCTTGCGGAGTA 18970 Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 || ||||| || |||||||| ||||| ||| | ||| || || ||||||| ||| || Sbjct 18971 CCTTCCTTTTCCTGGATCTTGGCTTTCACGTTCTCGCCGGTATCAGAAGCTTTGACCTCC 19030 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096 | | || ||||||| || | ||||||||||| ||||| Sbjct 19031 AAGGGGACGATCTTACCAGTGAGGGTCTTAACGAAGATCTG 19071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046599292838528