Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq9793 129 4e-25 seq10254 111 1e-19 seq6048 93.3 3e-14 >seq9793 Length=2388 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| |||||||||||||||||| || | ||| |||| | || ||| Sbjct 1199 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCTTCC 1258 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||| || ||||| |||||||| | |||||||||| || | ||||| || ||| Sbjct 1259 AACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGA 1318 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | |||| | || ||||| | | ||| || |||| || || ||||| Sbjct 1319 ATCTTGGCCTTC-ACGTTCTCGATCGTGTCCGAAGCTTCGACTTCCAATGTGATTGTCTT 1377 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | || ||||||||||||||||| Sbjct 1378 TCCAGTCAACGTTTTCACGAAGATTTGCAT 1407 Score = 129 bits (142), Expect = 4e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||||| |||||||||| || || || ||||| ||||||||||| Sbjct 1402 TTGCATTCCTCCTCTCAACCTCAACACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTA 1461 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| || || | || || || || || ||||| |||||||| | ||| || || Sbjct 1462 GTCGGAAAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAATCTCTGTTGGTC 1521 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | |||||||| || ||||| ||| | | ||| | || |||||| || Sbjct 1522 TGGTGGGATTCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCGATCGTGTCGCTGG 1580 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| | || || |||||||| || ||||||||||||||||| ||||| Sbjct 1581 CTTCAACCTCAAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 1635 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||| || || ||| |||||| ||||||||||| || | ||| ||| | || || Sbjct 971 ACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCA 1030 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || ||||| ||||| | ||| ||||| |||| || | |||||||| ||| Sbjct 1031 AGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 1090 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | |||| | ||||| || | | || ||||||| || || ||||| Sbjct 1091 ATCTTGGCCTTC-ACGTTCTCGATGGTATCAGAAGCCTCGACCTCCAAGGTGATGGTCTT 1149 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| |||||||| ||||| Sbjct 1150 GCCAGTGAGGGTCTTAACGAAGATCTGCAT 1179 Score = 113 bits (124), Expect = 3e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||||| | | ||||| || || ||| ||||| |||||||| ||||| Sbjct 1923 CATTCCACCTCTCAACCGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAATC 1982 Query 44167 GGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | || || || | || |||| || || ||||||||||| | ||| ||||| ||| Sbjct 1983 AGAAAG--GGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAGATGAGACGTTGCTGGTCT 2040 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | ||||||||| ||| ||||| ||| | || | |||||||||| | Sbjct 2041 GGGGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGACGCC 2100 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | || || ||||| || || | ||||||||| ||||| ||||| Sbjct 2101 TCGACCTCAAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2153 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || ||||||||||||||||||||||||| || | |||||||| ||| ||||| Sbjct 1782 CTTACCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTT 1841 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||| | || | ||||||||| || ||| ||||||| || || ||||| || || Sbjct 1842 GGCCTTGACATTTTCGATGGTGTCGCTGGCTTCGACCTCCAAGGTGATGGTCTTGCCAGT 1901 Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || ||||| || ||||| Sbjct 1902 GAGAGTTTTGACGAAAATCTGCAT 1925 >seq10254 Length=5829 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| |||||||||||||||||| |||| || ||| | || ||| Sbjct 5257 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCC 5198 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || || ||||||| ||| ||||| |||| || | || ||||| || Sbjct 5197 AGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 5138 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | ||| | ||||||||| |||||||||| || || ||||| Sbjct 5137 ATCTT-GGCTTTCACATTCTCGATGGTGTCGCTTCCCTCCACCTCCAAGGTGATGGTCTT 5079 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| ||||| |||||||| Sbjct 5078 GCCGGTCAAAGTCTTGACGAAAATTTGCAT 5049 Score = 96.9 bits (106), Expect = 2e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| ||||| |||||||| || ||||| |||| || | |||||||| ||| ||||| Sbjct 5420 CTTACCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTT 5361 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 ||||| |||| | ||||| || | | || ||||||| || || ||||| || | Sbjct 5360 GGCCTTCAC-GTTCTCGATGGTATCAGAAGCCTCAACCTCCAAGGTGATGGTCTTCCCGG 5302 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||||| ||||||||||| Sbjct 5301 TGAGGGTCTTCACAAAGATTTGCAT 5277 Score = 96.9 bits (106), Expect = 2e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| ||||| |||||||| || ||||| |||| || | |||||||| ||| ||||| Sbjct 5730 CTTACCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTT 5671 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 ||||| |||| | ||||| || | | || ||||||| || || ||||| || | Sbjct 5670 GGCCTTCAC-GTTCTCGATGGTATCAGAAGCCTCAACCTCCAAGGTGATGGTCTTCCCGG 5612 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||||| ||||||||||| Sbjct 5611 TGAGGGTCTTCACAAAGATTTGCAT 5587 >seq6048 Length=7890 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || ||||||| ||| |||||||||| ||| | |||||||| || ||||| | | Sbjct 1909 CCTGCGAAGATCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGTTC 1850 Query 44258 TT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315 || || ||| | ||||| ||| | || ||||||| ||||| || || ||||||| Sbjct 1849 TTGACATTGT--CAATGGTATCGCTTGGCTCTACCTCCAAGGTAATAGTTTTACCCGTGA 1792 Query 44316 GGGTCTTCACGAAGATTTGCAT 44337 |||| |||||||| |||||||| Sbjct 1791 GGGTTTTCACGAAAATTTGCAT 1770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359944630820544