Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq9793 176 1e-38 seq10254 138 3e-27 seq6048 114 3e-20 >seq9793 Length=2388 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || ||||| || ||||| || ||||| ||| | ||| Sbjct 1632 CAGATCTTCGTGAAGACCCTGACTGGAAAGACCATCACTCTTGAGGTTGAAGCCAGCGAC 1573 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| ||||| |||||| || ||||| ||||||||||| || ||||| || Sbjct 1572 ACGATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAACAG 1513 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||||||||| ||||||||||| | |||||| |||| || ||| || Sbjct 1512 AGATTGATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTTCCGACTACAACATC 1453 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 || || ||||| ||||| ||| | || ||||| Sbjct 1452 CAGAAGGAATCTACACTCCATTTGGTGTTGAG 1421 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| | || ||||| || ||||| | || || ||| || ||| Sbjct 1404 CAAATCTTCGTGAAAACGTTGACTGGAAAGACAATCACATTGGAAGTCGAAGCTTCGGAC 1345 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || |||||||||||||||||||||||||| || || |||||| Sbjct 1344 ACGATCGAGAACGTGAAGGCCAAGATTCAGGACAAAGAAGGAATCCCCCCAGATCAGCAA 1285 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||||||| | |||||||| | || || | || || ||| || Sbjct 1284 AGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGGCGCACCCTCTCGGACTACAACATC 1225 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 1224 CAAAAGGAGTCCACCCTCCA-CTTG 1201 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||| | ||||| || || || Sbjct 1176 CAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGGCTTCTGAT 1117 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| |||||||| |||||||| || || ||||||||| Sbjct 1116 ACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAA 1057 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||||||||| || |||||||| | ||||| | || || ||| || Sbjct 1056 CGTCTCATCTTCGCCGGAAAACAACTTGAAGATGGCCGCACTCTCTCTGACTACAACATC 997 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 996 CAGAAGGAGTCCACTCTCCATCTGGT 971 Score = 156 bits (172), Expect = 1e-32 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || || ||||| || ||||| || || ||| Sbjct 2150 CAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACTCTTGAGGTCGAGGCGTCCGAC 2091 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| ||||| ||||| || ||||||||| Sbjct 2090 ACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCAGACCAGCAA 2031 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||||||||| | ||||||||||| || ||| | ||||||||| || Sbjct 2030 CGTCTCATCTTTGCCGGAAAACAATTGGAAGATGGAAGAACCCTTTCTGATTATAACATC 1971 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || ||||| || || ||| Sbjct 1970 CAGAAGGAATCCACTCTCCAT 1950 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||||||||| || || || |||||| | ||||| ||| | ||| Sbjct 1922 CAGATTTTCGTCAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAAGCCAGCGAC 1863 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| ||||| || || || || ||||| Sbjct 1862 ACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 1803 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | ||||| || || || Sbjct 1802 CGTTTGATCTTTGCTGGTAA 1783 >seq10254 Length=5829 Score = 138 bits (152), Expect = 3e-27 Identities = 157/208 (75%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 ||||||||||| || ||| | || || || || |||||| | |||||||| |||| Sbjct 5052 CAAATTTTCGTCAAGACTTTGACCGGCAAGACCATCACCTTGGAGGTGGAGGGAAGC--- 5108 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||||| || ||| ||||| || ||||| || || || || || |||||| Sbjct 5109 GACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAG 5168 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||||| || |||||||| ||||| || || || ||||| | || || |||| || ||| Sbjct 5169 CAACGTCTGATCTTCGCTGGAAAGCAACTGGAGGATGGTCGCACCCTGTCCGACTACAAC 5228 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||||| || || || || || |||| Sbjct 5229 ATCCAAAAGGAGTCCACCCTCCA-CTTG 5255 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || ||||| || || || |||||| | ||||| || || || Sbjct 5280 CAAATCTTTGTGAAGACCCTCACCGGGAAGACCATCACCTTGGAGGTTGAGGCTTCTGAT 5339 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| |||||||| |||||||| || || ||||||||| Sbjct 5340 ACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAA 5399 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | ||||||||||| || Sbjct 5400 CGCTTGATCTTCGCCGGTAA 5419 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || ||||| || || || |||||| | ||||| || || || Sbjct 5590 CAAATCTTTGTGAAGACCCTCACCGGGAAGACCATCACCTTGGAGGTTGAGGCTTCTGAT 5649 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| |||||||| |||||||| || || ||||||||| Sbjct 5650 ACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAA 5709 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | ||||||||||| || Sbjct 5710 CGCTTGATCTTCGCCGGTAA 5729 >seq6048 Length=7890 Score = 114 bits (126), Expect = 3e-20 Identities = 116/149 (78%), Gaps = 9/149 (6%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA- 177973 ||||||| |||||||||||||||| ||||| || ||||| || ||| | ||||| || Sbjct 1767 AAAATGC---AAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACCTTGGAGGTAGAG 1823 Query 177974 --AAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCT 178031 |||| || ||||| || || ||||| | ||||| || ||||| |||||||| ||| Sbjct 1824 CCAAGC---GATACCATTGACAATGTCAAGAACAAGATCCAAGACAAGGAAGGAATTCCT 1880 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGG 178060 || || |||||||| || |||||||| || Sbjct 1881 CCAGATCAGCAACGTCTGATCTTCGCAGG 1909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203570309287808