Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq31313 105 1e-17 seq32018 89.7 1e-12 seq32875 86.0 1e-11 seq31049 84.2 5e-11 >seq31313 Length=25367 Score = 105 bits (116), Expect = 1e-17 Identities = 199/290 (69%), Gaps = 2/290 (1%) Strand=Plus/Minus Query 281734 TCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACC 281793 ||| || |||||| ||||| | |||||| || || || ||||| |||| || | | Sbjct 21775 TCAATTGCGTGAAAATATAACGTGCACTGGCACTATCCTTTCCACCTTGCAATCTTGTAC 21716 Query 281794 CAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCA 281853 |||| || || |||||| | | ||| | |||||||| || || |||| || |||| Sbjct 21715 CAAATTGTCCAATCGGCAAAAGCGTGTTCACATTATTGCTTCCAACAAAATCTTGCGCCA 21656 Query 281854 GGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAA 281913 |||| ||||| ||| | |||| ||||||||| ||||| || ||| |||| Sbjct 21655 AATTGATAATTGTTCCCATCAACGATTGCTCACCGTGATGATATGCAGATAATTCAGCAA 21596 Query 281914 CATAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGC-GCAA 281972 || ||| | ||||| || ||||| ||| | | ||||| ||| |||| Sbjct 21595 CAGCTCCAGCAAGTTGTGCAACTTTCACTTCTCGTTTATCCGCTCGTTTAAAACAAGCAA 21536 Query 281973 TATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAAT 282022 | |||||||||||||| ||||||||| |||||||| | | | ||||| Sbjct 21535 -ACAATACTTTTCGTTGTCCAGGCTTGAATCCATCAACCAAACAAGGAAT 21487 >seq32018 Length=6499 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 61088 TCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGAC 61147 |||||| ||||| || ||| ||||||||||||||||||| ||||| ||| | |||| || Sbjct 3208 TCAAGCTTCAACTTCCGAATTGTATGGAAAAGTTCAAGAGATTCCACAATCCGAAAAAAC 3267 Query 61148 TCCGTTTTATCCTCGTAGCCCGTATGGTG 61176 ||| |||||||| | || || ||||||| Sbjct 3268 TCCATTTTATCCAAGAAGTCCATATGGTG 3296 >seq32875 Length=5833 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||||| Sbjct 820 TTGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGA 761 Query 165768 GCCCC 165772 ||||| Sbjct 760 GCCCC 756 >seq31049 Length=5602 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||| Sbjct 2777 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 2836 Query 165769 CCCC 165772 |||| Sbjct 2837 CCCC 2840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057369162456170