Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq32583 161 1e-34 >seq32583 Length=15821 Score = 161 bits (178), Expect = 1e-34 Identities = 354/523 (68%), Gaps = 8/523 (2%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCG-CAATTAATTCCTATAAGTCGTA 16094 ||| || |||||||| |||||||| |||| |||||| ||||| || || || | | Sbjct 6689 ATCAGCAACAAATTCGATATATTGTGACAT-AAGTCGACAATTCATACCAATCATATCAA 6747 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 | || | ||| | || || |||| |||||| || || || ||||| || || || Sbjct 6748 CAGGCAAAGCCTCAGTCAAGAATTCTTGTTCGATTGAGACGGCATCTTTGATAATTTCAT 6807 Query 16155 TGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAA-ACATTAGACACGCGAAGTCG 16213 | |||| || | | ||| || | | | || ||| ||||| ||||| || Sbjct 6808 AGATTCGTTCTTGGCTCAATTTATT-TTGAAGCATCGAATACAAAAGACAAGCGAAATCA 6866 Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 | || |||||||||||||| || || || || ||| ||| || |||||||| | Sbjct 6867 CGGTGAAGTCCTTCGTCTCTTGAAATGAGCTCATTTGAATGAGTCAATCCTGGCATCAAT 6926 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 |||| || || |||||||| || | |||||||| || || |||||||| || || ||| Sbjct 6927 CCTCTCTTTTTCAACCAGAAAATTGAGGCAAATGAGCCGGAGAAGAATATTCCTTCGACA 6986 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | ||||| || ||||||| ||| || | | |||| ||||| | |||||||||| Sbjct 6987 GCAGCAAATGCAATTAATCTTTCAGCAAATGATGCATTTTTATCAGAAATCCATTTCAAG 7046 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCA--TCGTTTCTATGGCCTTAAACAATTTCT 16451 |||| || || || | ||| || | || | ||| || || || || | | | Sbjct 7047 GCCCAATCAGCCTTCTTTTTGATGAATTCGAATTCG--AAAATTGCATTGAAAAGTGAAT 7104 Query 16452 CTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTA 16511 | |||| || |||| ||||| || ||||||| | ||||||||||| || | Sbjct 7105 GTCTTTCTTGTTCATCGCGAATATAAGTTTCAATCAATTTTGAATACATTTCTGAATGAA 7164 Query 16512 TGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 |||| || || || || || |||||||| ||| |||| || || Sbjct 7165 TGTTTTCAATTGCAATTTGGAATCCATAAAAGAATCGGGCTTC 7207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511199868051880