Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq31956 237 2e-57 seq32583 156 5e-33 >seq31956 Length=51777 Score = 237 bits (262), Expect = 2e-57 Identities = 574/857 (67%), Gaps = 19/857 (2%) Strand=Plus/Plus Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 53476 ||| | |||||||| | || |||||| | |||||||| |||||||| ||| || || Sbjct 35790 GCTTGCTCACAACTTTCATCCAATGCAGCATAATAAATTGTTTCGAAAATCCGTTTGTTC 35849 Query 53477 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 53536 | |||| || | | | |||||||| | | || || || ||||| ||| Sbjct 35850 AAATCTCTGGCAGCTTGAGAAGTGAATGGATATCTCATAAGCATGAAACAATCTGCCAAT 35909 Query 53537 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 53596 ||||| ||||| | || || || | ||| | | |||| || ||| ||||| |||| Sbjct 35910 CCTTGTACACCTAATCCAATTGGACGATGACGCATATTTGAATTTTTGGCTTCAGGAACT 35969 Query 53597 GGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCC 53656 ||||||||||| || || || || || || | |||||| | | | || || Sbjct 35970 GGATAATAATTGATGTCAATGATCTTGTTCAAGTTTCTTGTGAGAGCGCGAGCAACTTCA 36029 Query 53657 TTCAGTTTGAGAAAATCAAAT---TGTCCATCTATTACAAACATGTTCAATGCAATAGAT 53713 ||||||| ||||| || | | || ||||||| ||||| ||||| ||| Sbjct 36030 GCGAGTTTGACGAAATCGAAAGTCTTTTCAGGGGTTACAAATCGATTCAACGCAATTGAT 36089 Query 53714 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 53773 |||| ||||||||| || || |||| | | || | || || || |||||||| | | Sbjct 36090 GCCAAATTACAAACCGCAACTTCATCTGGACTCGAAACTTCCATAATTTCAGTGCACAAA 36149 Query 53774 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 53833 || || || || ||||| | ||||||||||||| | ||| ||| |||||| ||| Sbjct 36150 TTCGAGCATTTAATTGTTCCAATATTTTGTTGATTAGTTTTTCGATTAGCCGCATCTTTA 36209 Query 53834 TAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATA-ATC--GCTTTCCAGACG 53890 || || | ||| | ||||| ||||| || |||| ||| | | ||| ||| | Sbjct 36210 TATGTGATATAAGGCATTCCAGTCTCAATTTG--ATTCGATACAACATGCTC-CCACAAT 36266 Query 53891 ACACGAGCCTTTATTATAGATTTGTATCTCTTTTC--TCTTTCGTATAGT--GTATACAA 53946 | || || | || ||| | || |||||| |||||| ||| | || || | Sbjct 36267 TTTCTCGCTTTCAC---AGTTTT-TCTCACTTTTCCCTCTTTCTCATATTTGGTGTAAAG 36322 Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 54006 ||| ||||| || |||||||| | || | ||| ||||||| || ||||| | Sbjct 36323 AGCTTCGAACTCTTCACCCCAAACTTCATCGAGTCCTTGACATTCGCAAGGGCACATTAG 36382 Query 54007 CGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 54065 |||||| ||| |||| || ||| || |||||||| || | ||| || | ||||||||| | Sbjct 36383 CGACCAATCTTCGTC-TCTTTCGACGCGTTTCATGAACAAATCTGGGACCCAAAGAGCCA 36441 Query 54066 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 54125 || ||||| | | ||| | ||| || || || || || ||| ||| ||| Sbjct 36442 GGAAAAGATCGCGAGCTCTCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCGACGAATT 36501 Query 54126 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTC 54185 | | |||||| | |||||| ||||| | || || | | | || || |||||||||| Sbjct 36502 CGAAAATATCGGCATGCCATGGTTCGAGATAAATAGCAAAGGCACCTGGACGTTTGTTTC 36561 Query 54186 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 54245 | || ||||| | ||||| || ||||| || ||||| | | |||||||| || ||||| Sbjct 36562 CACCTTGATCGACATATCTGGCTGTGTTGTTGTAAACGCGAAGCATTGGAACAAGACCAT 36621 Query 54246 TGGATGCACCATTGGTC 54262 | |||| || |||||| Sbjct 36622 TTGATGTTCCGTTGGTC 36638 Score = 217 bits (240), Expect = 2e-51 Identities = 432/635 (68%), Gaps = 10/635 (2%) Strand=Plus/Plus Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366 ||| || || || || |||| ||||| ||||| ||| |||| | ||||| ||||| || Sbjct 36736 ACCGATTCCACCAGCATTTTTCGAGATCAATGCACATTGTTTCAGAGTATCGTAGATTCC 36795 Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 | || |||||| |||| | || | ||| || |||||||| | |||| ||| Sbjct 36796 CAAGATCGAATCATCGCTCATTGTTAGCAAAAAGCAAGATGACATTTGTGGCCGACGAGT 36855 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 ||||| || || || || || ||||| || || | || | || || | |||||||| Sbjct 36856 TCCCGAGTTGAACAATGTTGGCGAAGCATGTGTCATATATCTCTCCGACATGAGATTGTA 36915 Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 || ||||| |||| || | ||| | |||||||| || | || | ||| ||||| Sbjct 36916 GGTTTCGATGGCTGCATCAACATCGTCTCCGTGAATTCCAACAGAAACTCTCATCAACAT 36975 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 || || || | ||| ||||| | | | ||||||| | || ||| |||||| ||| Sbjct 36976 TTGTTGTGGGCGTTCGACGATTTGATCATCGATTTTCAAAAGATACGATCTTTCCAGAGT 37035 Query 54607 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTT 54666 ||| |||||||| || ||||||| | || || ||||||| || ||||||| ||||| Sbjct 37036 TTTGAAACCAAAGAAGGTGTATGAGTAATCGCGATCGTAAACGATGGCTGAGTTAAGTTT 37095 Query 54667 ATCCTTATATTTGTTAACTACATCCATGGTAA--TACTTGA--AATAATCGGAGAATGTT 54722 ||| || ||| ||| | || |||| | ||||| ||| || |||||||||| Sbjct 37096 ATCTGCATTTTTCATAATTGTATT----GTAAGTTTCTTGACTAATCATTGGAGAATGTT 37151 Query 54723 TCCCATTTTTAGGATTGACATAGTTAA-ATAAATCCTTCATCACTTCACTAAATAGtttt 54781 || | ||||| || | || | ||| |||||||||||| || | ||| Sbjct 37152 GTCCGGTCAAAGGAT-GATGGAATTCGTACAAAGTTTTCATCACTTCAGAGAAAACTTTG 37210 Query 54782 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGA 54841 ||||||| ||||| | || || || || ||||| || || |||| ||||| || ||| Sbjct 37211 TTTGTTTTCTTGTGCAAGTTAGAAACAGCAATTCTTGCAGCAAGAAGAGCATATTCTGGA 37270 Query 54842 TGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTT 54901 ||||| || || | || || |||| || | ||| | |||||||| || |||||| Sbjct 37271 TGTTGAGTTGTCATTGAAGCGGCGGTTTCAGCGGCAAGATTATCCAATTCAACAGTTGTT 37330 Query 54902 ACTCCATTATATATTCCTTGGATAACCTTCATAGC 54936 || || || || | ||| ||| || || || || Sbjct 37331 ACACCTTTGTACAATCCACTGATGACTTTGATGGC 37365 Score = 141 bits (156), Expect = 1e-28 Identities = 297/439 (68%), Gaps = 9/439 (2%) Strand=Plus/Plus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||||| || | | ||| |||||||| || || | || |||| || || ||| Sbjct 35147 GCTGGTTTTGTTCTCAAATAATACATTCCAGTCTTCAATCCCTTCTTCCAACCATAGAAA 35206 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 ||||| ||| | || |||||| || | || ||||| ||||||| | ||| | Sbjct 35207 TGCATTGATGTGATCGCGGCATAACTTGGTTTAGCCATATGAATATTCAAACTTTGTGAT 35266 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| ||||| ||||| | ||||||||||| | || ||| ||||| | |||||| Sbjct 35267 TGATCAATGAAAGCTCCGCGATCTGCAGCCATCTCAATAATCTCTTTTTGCGATATTTCC 35326 Query 53009 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATA 53062 |||| ||||| || ||||| || || || ||||| |||| |||| ||||| Sbjct 35327 CAAACTGTTTTGTACAACTC-TTTGATTTCAGTTGGAA--TTTGTTCAATATTTTGAATC 35383 Query 53063 GATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 53122 |||||| | || | | ||| || || ||||||| ||||||| || Sbjct 35384 GATCCATTGCTGGCAATCAATCGATTTTTCATATCATCATCCCATAATCCAAGTTCAACC 35443 Query 53123 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 53182 ||| | | | | ||| ||||| || | ||| || || |||||||| || | |||| Sbjct 35444 AAATCCTTCAACAAATGTGGATTGACAATTTGGAAATCGCCAGACAAAACACGTCGAGAA 35503 Query 53183 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 53242 || ||||| || || ||||| | |||||||| ||||| | |||||||| || || Sbjct 35504 TAGATATTGGAAGTGTATGGTTCAATTGACTCATTGTTTCCGAGGATTTGAGCTGTGGAA 35563 Query 53243 GCAGTCGGCATAGGTGCCA 53261 ||||| ||||| || |||| Sbjct 35564 GCAGTTGGCATTGGAGCCA 35582 >seq32583 Length=15821 Score = 156 bits (172), Expect = 5e-33 Identities = 359/536 (67%), Gaps = 21/536 (4%) Strand=Plus/Plus Query 23949 CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAA 24008 ||||||||| | ||| ||| || ||||| || |||||| | ||| | | |||| Sbjct 6669 CCCAATTCAACCAACAAATGATCAGCAACAAATTCGATATATTGTGACATAAGTCGACAA 6728 Query 24009 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 24068 ||||| || || | | ||| || | |||| |||| | ||||||||||| || ||||| Sbjct 6729 TTCATACCAATCATATCAACAGGCAAAGCCTCAGTCAAGAATTCTTGTTCGATTGAGACG 6788 Query 24069 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 24128 || ||| | ||||| || || | ||| | || ||| | |||| || || || | Sbjct 6789 GCATCTTTGATAATT--TCATA--GATTCGTT-CT---TGGCT-CAATTTATTTTGAAGC 6839 Query 24129 ATCAAA---------CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 ||| || || |||||||| | ||| || || |||||||| ||| | || Sbjct 6840 ATCGAATACAAAAGACAAGCGAAATCACGGTGAAGTCCTTCGTCTCTTGAAATGAGCTCA 6899 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 || ||| || | ||| ||||| | || | |||||| | ||| || || || |||||| Sbjct 6900 TTTGAATGAGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATTGAGGCAAAT 6959 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG 24299 || || || ||||| |||||||| || || ||||| ||||| | |||||| || | Sbjct 6960 GAGCCGGAGAAGAATATTCCTTCGACAGCAGCAAATGCAATTAATCTTTCAGCAAATGAT 7019 Query 24300 GCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 24356 || | | || ||||| || |||||||| ||||||||||| | | | | Sbjct 7020 GCATTTTTATCAGAAATCCATTTCAAGGCCCAATCAGCCTTCTTTTTGATGAATTCGAAT 7079 Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 || ||||| || || | | | |||| | ||| || ||| || |||||| Sbjct 7080 TCGAAAATTGCATTGAAAAGTGAATGTCTTTCTTGTTCATCGCGAATATAAGTTTCAATC 7139 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 || ||||||||| ||||||||||||||||| || ||||| ||||| || || Sbjct 7140 AATTTTGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTGGAATCCATAAAA 7195 Score = 93.3 bits (102), Expect = 5e-14 Identities = 106/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 23785 TTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTC---TTCTTGAGACATAACTCCCA 23841 || |||| |||||| | || | | ||| ||| || ||||| | |||||| || Sbjct 6427 TTGTTTAGAAGTCAGCTTCGAGATCAAATTGACGTTCAGATTCTTTTGTCATAACACCAG 6486 Query 23842 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 23901 | |||| ||||| |||||||| ||||| ||||| ||||| || || | |||||||| Sbjct 6487 GTCTTTGATATTCGGAAACACGTTTCTCGAAGAAATTTGTTTTTCCGTCGATTGATATAT 6546 Query 23902 TTTCCATGAAATCGGATGGATT 23923 |||||||||||||| ||||||| Sbjct 6547 TTTCCATGAAATCGAATGGATT 6568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593472541210320