Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq17077 138 1e-27 >seq17077 Length=1461 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 145731 GATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA 145790 || ||| || ||||||||||| || || | || ||||||||| || ||||| | ||| Sbjct 1437 GACGAACTCGCCGGGCTCGAGCCCGGTCTGCTGCGCGACCATGAGCGTAAGCAGCGCGTA 1378 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 | ||| || ||||| |||||||| || |||||| | ||||||||||| |||||||| Sbjct 1377 GGAGGCGATATTGAACGGCACCCCGAGGAACATGTCGGCAGAGCGCTGGTAGAGCTGGCA 1318 Query 145851 GGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 ||||||| ||| | ||||||||||||||| | | |||||| || | || ||||| Sbjct 1317 CGAGAGCTTGCCGTCGGCCACGTAGAACTGGAAGAACGCGTGGCACGGTGCGAGCGCCAT 1258 Query 145911 GGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAG 145949 | || |||||| |||||| |||| || || ||| Sbjct 1257 CTGGTCGAGCTCCGCCACGTTCCACGCGGAGACGATGAG 1219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589829270158360