Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq13386 89.7 4e-13 >seq13386 Length=19191 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || | || |||| || | || || || ||||||||||| ||||| | Sbjct 12197 TTCCTCCTCTGAGACGAAGAACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 12256 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| |||| |||| ||||| || || | || | ||| || ||||| | Sbjct 12257 AGAGGGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTG 12316 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| || || ||| || | ||| |||||| | ||| Sbjct 12317 GGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAA 12376 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | ||| |||||||| ||||| || ||||||||||| |||||||| Sbjct 12377 CTTCAAGGGTGATGGTCTTTCCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422086495855244