Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq13386 149 6e-31 seq30935 105 7e-18 >seq13386 Length=19191 Score = 149 bits (164), Expect = 6e-31 Identities = 158/206 (77%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| ||||||||||||||| | || ||||||||| | Sbjct 12198 AATGCAAATTTTCGTCAAGACCCTCACCGGCAAAACCATCACCTTGGAAGTCGAAGCCTC 12139 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| |||||| || || | ||||| || || ||||| | || | Sbjct 12138 TGACACCATCGAAAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATC 12080 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||||| ||||||| ||| || ||||| |||| || | ||||| ||| |||||||| Sbjct 12079 AACAACGTCTCATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACTCTCTCCGACTACA 12020 Query 40868 ACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||| ||||| | || || ||| Sbjct 12019 ACATCCAAAAGGAATCGACTCTTCAT 11994 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || ||||| | || || ||||||||||| | || |||||||| | Sbjct 14203 AATGCAAATCTTTGTCAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTCGAAGCTTC 14144 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | |||| |||||| || || | ||||| || || || || | |||| Sbjct 14143 TGATACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACC 14085 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| || | |||| ||| || ||||| |||| || | | |||||| |||||||| Sbjct 14084 AACAAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACCCTCTCCGACTACA 14025 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||| || || | || || || | || ||| | ||||| || || Sbjct 14024 ACATCCAAAAAGAATCAACACTTCACTTGGTTTTGAGATTGAGAGGAGG 13976 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || || || ||||||||| | || || || || | Sbjct 12425 ATGCAAATCTTTGTCAAAACTTTGACCGGAAAGACCATCACCCTTGAAGTTGAGGCTTCT 12366 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||| | ||||||| |||||||| || ||||| | ||||| Sbjct 12365 GATACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 12306 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | |||| ||| || ||||| |||| |||| | |||||| |||||||||| Sbjct 12305 CAAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACCCTCTCCGACTACAAC 12246 Query 40870 ATCCAGAAGGA 40880 || || || || Sbjct 12245 ATTCAAAAAGA 12235 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || || ||||||||||| | || || ||||| | Sbjct 13746 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAAGCTTCG 13687 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||| | |||||||| || ||||| || || || | ||||| Sbjct 13686 GACACAATTGAAAATGTCAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCAGACCAA 13627 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | || | || || ||||| |||| || | | || ||| |||||||||| Sbjct 13626 CAAAGATTGATTTTTGCCGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGACTACAAC 13567 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || ||| |||| || || Sbjct 13566 ATCCAAAAAGAGTCCACCCTCCA 13544 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| || ||||| ||||| | || || ||||| | Sbjct 13975 AATGCAAATCTTCGTCAAGACACTCACTGGAAAAACAATCACACTTGAAGTTGAAGCTTC 13916 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| |||| | || || | ||||| || || ||||| | || || Sbjct 13915 TGACACCATCGAAAATGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 13856 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||| | || || ||||| |||| || | ||||| | || ||||| Sbjct 13855 ACAACGTCTCATTTTTGCCGGAAAACAATTGGAAGATGGACGCACATTGTCTGATTACAA 13796 Query 40869 CATCCAGAAGGA 40880 |||||| ||||| Sbjct 13795 CATCCAAAAGGA 13784 >seq30935 Length=6295 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || ||||| || || || ||| |||| ||||| ||| | Sbjct 1268 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTACCCTCGAAGTCGAGGCCTCG 1327 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||| | || || | ||||| || || ||||| | || || Sbjct 1328 GACACCATCGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 1387 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | |||| ||| || ||||| || || || | || || || |||||||||| Sbjct 1388 CAAAGATTGATCTTCGCCGGAAAACAACTCGAGGATGGACGTACTCTTTCCGACTACAAC 1447 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| |||||| | || || || Sbjct 1448 ATCCAAAAGGAGTCGACCCTTCA 1470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515003071985840