Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq13386 116 3e-21 >seq13386 Length=19191 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || || ||||| |||||||| ||| | |||||| ||| || Sbjct 11989 ACCAAATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTCC 12048 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||||| ||| |||||||||| || ||||| || || || || ||||||||| Sbjct 12049 AATTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 12108 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| | | ||||| || | ||| | |||||| Sbjct 12109 ATCTTGGCCTTGACGTTTTCGATGGTGTCAGAGGCTTCGACTTCCAAGGTGATGGTTTTG 12168 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| ||||| Sbjct 12169 CCGGTGAGGGTCTTGACGAAAATTTGCAT 12197 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||| || ||||||||||||||||| ||| | || | || || Sbjct 12217 ACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTTCCGTCTTCC 12276 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||||| ||| |||| | | || || || || || || || || |||||| | Sbjct 12277 AATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGA 12336 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | ||||| ||| || | ||| || || | ||| | || || Sbjct 12337 ATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAACTTCAAGGGTGATGGTCTTT 12396 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| |||||| ||||| || ||||| Sbjct 12397 CCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| || ||||| ||||||||||| || ||||| ||| || Sbjct 13766 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAATGTGCGTCCATCTTCC 13825 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||||| || | |||||||| || ||||| || || || || ||||||||| Sbjct 13826 AATTGTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 13885 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | ||||| |||||| | ||| || || || | || | ||||| Sbjct 13886 ATCTTAGCTTTGACATTTTCGATGGTGTCAGAAGCT-TCAACTTCAAGTGTGATTGTTTT 13944 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || || ||||| Sbjct 13945 TCCAGTGAGTGTCTTGACGAAGATTTGCAT 13974 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | |||||||| |||||||||| ||| || || |||||||| || ||||| Sbjct 13011 CCTCCTCTCAATCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATCCGAA 13070 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | ||| || | |||||||| ||| |||| | | || || || || || Sbjct 13071 AGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGA 13130 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGAC 118690 || || || |||||| || || || || | ||| | |||||| | ||| ||||| Sbjct 13131 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCT-TCGAC 13189 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||||||||| || || || || ||||| ||||| Sbjct 13190 TTCCAAGGTGATAGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCAT 13237 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||||||||| |||||||| ||| | ||| | ||| || Sbjct 13538 ACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCC 13597 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||||| || | || | | || || || || || || || || || ||| | Sbjct 13598 AATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGA 13657 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||| || | ||| | ||||||| ||| || || || | || | ||||| Sbjct 13658 ATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCT-TCAACTTCCAATGTGATGGTTTT 13716 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||||| ||||| || ||||| Sbjct 13717 TCCAGTCAATGTTTTGACAAAGATTTGCAT 13746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433652963230828