Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq32583 159 3e-34 >seq32583 Length=15821 Score = 159 bits (176), Expect = 3e-34 Identities = 383/572 (67%), Gaps = 22/572 (4%) Strand=Plus/Plus Query 16043 TCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAA 16102 || || |||||||| | ||| || ||| || |||||||| ||||| ||| ||| || Sbjct 6663 TCACAACCCAATTCAACCAACAAATGATCAGCAACAAATTCGATATATTGTGACAT-AAG 6721 Query 16103 TC-ACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTAT 16161 || ||| ||||| || || | | |||||| | || || || || || | || ||| || Sbjct 6722 TCGACAATTCATACCAATCATATCAACAGGCAAAGCCTCAGTCAAGAATTCTTGTTCGAT 6781 Query 16162 ATTAACCGCTTCAATGATTATATC------TCTTACTACACT--ATTTAACGGAGGGTTT 16213 || || || |||| || || || | || || ||||| ||| Sbjct 6782 TGAGACGGCATCTTTGATAATTTCATAGATTCGTTCTTGGCTCAATTTAT-------TTT 6834 Query 16214 AATAAGTGTTTAA-ACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTAT 16272 | || | || ||| | |||||| ||||||| || | ||||||||| || || Sbjct 6835 GA--AGCATCGAATACAAAAGACAAGCGAAATCACGGTGAAGTCCTTCGTCTCTTGAAAT 6892 Query 16273 TAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGC 16332 | ||| |||||| || | |||||||| | ||||| ||||| | ||| || || | Sbjct 6893 GAGCTCATTTGAATGAGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATTGA 6952 Query 16333 GGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC 16392 ||||||||| || || |||||||| ||||| || || |||||||||| |||| ||| | Sbjct 6953 GGCAAATGAGCCGGAGAAGAATATTCCTTCGACAGCAGCAAATGCAATTAATCTTTCAGC 7012 Query 16393 GTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACA 16452 | | | ||||||| |||||||| ||||||| || || | ||| | | Sbjct 7013 AAATGATGCATTTTTATCAGAAATCCATTTCAAGGCCCAATCAGCCTTCTTTTTGATGAA 7072 Query 16453 GTTCATGTTCTCTA-TTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAG 16511 ||| ||| | ||||||| || | ||| | |||||| ||| |||||||| Sbjct 7073 -TTCGAATTCGAAAATTGCATTGAAAAGTGAATGTCTTTCTTGTTCATCGCGAATATAAG 7131 Query 16512 TATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCAT 16571 | || || | | |||||||||||||||||| || || ||||| || || || |||| Sbjct 7132 TTTCAATCAATTTTGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTGGAATCCAT 7191 Query 16572 AAAAGCATCTAGCTTCGGATATTTGTACTTCA 16603 ||||| ||| ||||| || | || |||||| Sbjct 7192 AAAAGAATCGGGCTTCTGAGACTTTGACTTCA 7223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462317981997400