Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq13386 98.7 8e-16 >seq13386 Length=19191 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||||||| || |||||||| || || || || || |||||||||||| Sbjct 13976 CCTCCTCTCAATCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGGAG 14035 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | || |||| ||||||||||||||| ||||| | |||||||| || || Sbjct 14036 AGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGA 14095 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| || || ||| || | | | | | || | | || || Sbjct 14096 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGACT 14155 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || || || |||| ||| || |||||||||||||| Sbjct 14156 TCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 14202 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || || || ||||||||||||||| || | |||| ||| Sbjct 12217 ACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTTCCGTCTTCC 12276 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||||||||||||| ||||| | |||||||| || || | || || ||||| | Sbjct 12277 AATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGA 12336 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | | || | |||| || || | ||| || ||||| Sbjct 12337 ATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAACTTCAAGGGTGATGGTCTTT 12396 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||| || |||||||||||||| Sbjct 12397 CCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||||||| || |||||||| || || ||||| ||||| || || || Sbjct 13011 CCTCCTCTCAATCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATCCGAA 13070 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | || |||| ||||||||||||||| ||||| | |||||||| || || Sbjct 13071 AGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGA 13130 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || ||||| || || ||| || | | | |||| | | || || Sbjct 13131 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCGACT 13190 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || || ||||| || || ||||| || || |||||||| Sbjct 13191 TCCAAGGTGATAGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCAT 13237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394913614119739