Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq32583 208 7e-49 >seq32583 Length=15821 Score = 208 bits (230), Expect = 7e-49 Identities = 394/564 (70%), Gaps = 18/564 (3%) Strand=Plus/Plus Query 14005 CACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGA 14064 |||| | |||||||| | ||| | | || ||| |||| || || |||||||| || Sbjct 6656 CACTCTGTCACAACCCAATTCAACCAACAAATGATCAGCAACAAATTCGATATATTGTGA 6715 Query 14065 CATTAAATC-ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTT 14123 ||| || || |||||||||||| || | | ||||| | | || || ||||||| Sbjct 6716 CAT-AAGTCGACAATTCATACCAATCATATCAACAGGCAAAGCCTCAGTCAAGAATTCTT 6774 Query 14124 TTTCTATAGACACAGCCTCGTTTATAATAATCGTA-ATAATTTCATTAGAAGGAGGATAT 14182 ||| || || || || || || ||||| || || || ||| | | | ||| Sbjct 6775 GTTCGATTGAGACGGCATCTTTGATAATT-TCATAGATTCGTTCTT--GGCTCAATTTAT 6831 Query 14183 TTT--AG-AT-GTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACT 14238 ||| || || | || ||| | ||| || ||||||| ||||| || || ||||| Sbjct 6832 TTTGAAGCATCGAATACAAA--AGACAAGCGAAATCACGGTGAAGTCCTTCGTCTCTTGA 6889 Query 14239 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 14298 ||| || || |||||| || ||||||||||||||||||| ||||| ||||| || || Sbjct 6890 AATGAGCTCATTTGAATGAGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAAT 6949 Query 14299 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC 14358 || || ||||| ||||| ||||||||||| || || |||||||| || ||||||| ||| Sbjct 6950 TGAGGCAAATGAGCCGGAGAAGAATATTCCTTCGACAGCAGCAAATGCAATTAATCTTTC 7009 Query 14359 TCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 14418 |||| ||||| ||||| | || |||||||| ||||| |||| || ||||| || Sbjct 7010 AGCAAATGATGCATTTTTATCAGAAATCCATTTCAAGGCCCAATCAGCCTTCTTTTTGAT 7069 Query 14419 AAAATCCATTGTTTCAATAGCATT---AAATAAATGTTCCTTCTCTTTAGTACTTGAAAT 14475 || || | | ||| ||||| || | |||| || |||| || | | | ||| Sbjct 7070 GAATTCGAATTCGAAAATTGCATTGAAAAGTGAATG-TCTTTCTTGTTCAT-CGCG-AAT 7126 Query 14476 GTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAA 14535 || || ||||| | | ||||||||| || || |||||||| || || || || || Sbjct 7127 ATAAGTTTCAATCAATTTTGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTGGAA 7186 Query 14536 ACCATAAAAACATCTAGCTTCTGA 14559 |||||||| ||| |||||||| Sbjct 7187 TCCATAAAAGAATCGGGCTTCTGA 7210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482143262050120