Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13386 132 4e-26 seq31956 114 1e-20 seq30935 86.0 6e-12 >seq13386 Length=19191 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || |||||||| |||||| | || || ||| | || Sbjct 12197 ATGCAAATTTTCGTCAAGACCCTCACCGGCAAAACCATCACCTTGGAAGTCGAAGCCTCT 12138 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| | || ||||||||||| | || || || || Sbjct 12137 GACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 12078 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| || ||||| |||||||| | ||| | ||| || ||| Sbjct 12077 CAACGTCTCATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACTCTCTCCGACTACAAC 12018 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || ||||| ||||||||||||||| |||| ||| Sbjct 12017 ATCCAAAAGGAATCGACTCTTCATTTGGTTCTT 11985 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || ||||| ||||| | || |||||| | || Sbjct 13974 ATGCAAATCTTCGTCAAGACACTCACTGGAAAAACAATCACACTTGAAGTTGAAGCTTCT 13915 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| |||||| | || ||||||||||| | || || || || Sbjct 13914 GACACCATCGAAAATGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 13855 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||||| || || || || ||||| |||||||| | | | || || ||||| || Sbjct 13854 CAACGTCTCATTTTTGCCGGAAAACAATTGGAAGA-TGGACGCACATTGTCTGATTACAA 13796 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||| ||||| || ||||| |||| || Sbjct 13795 CATCCAAAAGGAATCTACCCTTCACTTGGTTCT 13763 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || ||| |||| || || || |||||| | || ||||| | || Sbjct 12425 ATGCAAATCTTTGTCAAAACTTTGACCGGAAAGACCATCACCCTTGAAGTTGAGGCTTCT 12366 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| |||||| | ||| ||||| ||||| | || || ||||| Sbjct 12365 GATACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 12306 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || ||||| || ||||| ||||||||| | || | ||| || ||| Sbjct 12305 CAAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACCCTCTCCGACTACAAC 12246 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||||||||| || || || |||| ||| | || || || || Sbjct 12245 ATTCAAAAAGAATCAACACTCCACTTGGTTCTTCGTCTCAGAGGAGG 12199 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || |||||||| |||||| | || || ||| | || Sbjct 13237 ATGCAAATTTTCGTCAAGACCCTCACCGGCAAAACTATCACCTTGGAAGTCGAAGCTTCT 13178 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| | || ||||| ||||| | || || ||||| Sbjct 13177 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 13118 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || ||||| || ||||| |||||||| | || | |||||||| Sbjct 13117 CAAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCAGAACCCTTTCGGATTATAAT 13058 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| || || || |||| | ||| |||| || || Sbjct 13057 ATTCAAAAGGAATCAACACTCCACTTGGTTTTGAGATTGAGAGGAGG 13011 >seq31956 Length=51777 Score = 114 bits (126), Expect = 1e-20 Identities = 322/489 (66%), Gaps = 8/489 (2%) Strand=Plus/Plus Query 22100 GCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATAC 22159 || || ||||| || ||||| || | || || | || ||||| || | | ||||||| Sbjct 35111 GCAGTTTTGTCAACAGTAAATTGAACAGCATTCACAGCTGGTTTTGTTCTCAAATAATAC 35170 Query 22160 ATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAA 22219 || || ||||||| ||| ||||||| | || ||||| || || || | ||||| Sbjct 35171 ATTCCAGTCTTCAATCCCTTCTTCCAACCATAGAAATGCATTGATGTGATCGCGGCATAA 35230 Query 22220 CTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCG 22279 || || |||| | | ||| || || ||||| || || ||||| ||||| Sbjct 35231 CTTGGTTTAGCCATATGAATATTCAAACTTTGTGATTGATCAATGAAAGCTCCGCGATCT 35290 Query 22280 GCGGCCATATTTATCAATGTACGCAT-CGACATTTCCCATACGGTCTTGTACAGTTGCCT 22338 || ||||| | || ||| | | ||| |||||||| || || ||||||| | | Sbjct 35291 GCAGCCATCTCAAT-AATCTCTTTTTGCGATATTTCCCAAACTGTTTTGTACAACTCTTT 35349 Query 22339 GATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAA--- 22395 ||| || || || ||| || | || | || || || || | | ||||| Sbjct 35350 GATTTCAGTTGGAATTTGTTCAATATTTTGAATCGATCCATTGCTG-GCA--ATCAATCG 35406 Query 22396 ATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTT 22455 |||||| || ||| | ||| || || | | |||||| || | || ||| | || Sbjct 35407 ATTTTTCATATCATCATCCCATAATCCAAGTTCAACCAAATCCTTCAACAAATGTGGATT 35466 Query 22456 CACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTC 22515 || | ||| || ||||| ||||| || || || || || ||||| ||| | ||||| Sbjct 35467 GACAATTTGGAAATCGCCAGACAAAACACGTCGAGAATAGATATTGGAAGTGTATGGTTC 35526 Query 22516 GAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAG 22575 | || ||||||||||| || || ||||| || ||||| || ||||| || |||| || Sbjct 35527 AATTGACTCATTGTTTCCGAGGATTTGAGCTGTGGAAGCAGTTGGCATTGGAGCCATGAG 35586 Query 22576 TAGCGAGTT 22584 || || || Sbjct 35587 AAGAGAATT 35595 Score = 107 bits (118), Expect = 2e-18 Identities = 234/349 (67%), Gaps = 10/349 (3%) Strand=Plus/Plus Query 23591 GAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATC 23650 ||||| | || |||| ||||| || | ||||| || || || | |||||| ||| Sbjct 36704 GAACCAGTCGCACGAATCTTGTGTACATTCAAACCGATTCCACCAGCATTTTTCGAGATC 36763 Query 23651 ATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACC 23710 | || |||||||||||||| |||||||| ||| ||| || || | | | | | Sbjct 36764 AATGCACATTGTTTCAGAGTATCGTAGATTCCCAAGATCGAATCATCGCTCATTGTTAGC 36823 Query 23711 AAGAAACACGAAGACATTTGCGCTTTGGGCG--TAGCGGCCGA---GAACAGTGTCGGGC 23765 || || || || |||||||| ||| || || |||| ||||| ||| || Sbjct 36824 AAAAAGCAAGATGACATTTG-----TGGCCGACGAGTTCCCGAGTTGAACAATGTTGGCG 36878 Query 23766 TGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGT 23825 || || || | |||| | |||||| |||||||| || |||||||| ||||||| | Sbjct 36879 AAGCATGTGTCATATATCTCTCCGACATGAGATTGTAGGTTTCGATGGCTGCATCAACAT 36938 Query 23826 CCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGA 23885 | |||||||| || || | | || | ||||| ||| | ||| || | ||||| | Sbjct 36939 CGTCTCCGTGAATTCCAACAGAAACTCTCATCAACATTTGTTGTGGGCGTTCGACGATTT 36998 Query 23886 CGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934 | | ||||| || ||||| || | || || ||||| || ||||| Sbjct 36999 GATCATCGATTTTCAAAAGATACGATCTTTCCAGAGTTTTGAAACCAAA 37047 Score = 105 bits (116), Expect = 6e-18 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| |||||| |||| || | ||| || | ||| ||||| ||| || ||||| || | Sbjct 36400 TTTCGACGCGTTTCATGAACAAATCTGGGACCCAAAGAGCCAGGAAAAGATCGCGAGCTC 36459 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | | || ||| ||| ||||| || | | | | || || || | || ||||||| Sbjct 36460 TCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCGACGAATTCGAAAATATCGGCATGCC 36519 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAAC 23519 | || ||||| |||| ||||| || || || | || || || || |||||||| || | Sbjct 36520 ATGGTTCGAGATAAATAGCAAAGGCACCTGGACGTTTGTTTCCACCTTGATCGACATATC 36579 Query 23520 GGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||| ||||||||||| || | ||||| || || ||||| || || Sbjct 36580 TGGCTGTGTTGTTGTAAACGCGAAGCATTGGAACAAGACCATTTGA 36625 >seq30935 Length=6295 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||||||||| || || || || ||| |||| || || | || Sbjct 1267 CATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTACCCTCGAAGTCGAGGCCTC 1326 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||||| |||||| | || ||||||||||| | || || || || Sbjct 1327 GGACACCATCGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 1386 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 || | | || ||||| || ||||| | || || | | | ||| | ||| || | Sbjct 1387 ACAAAGATTGATCTTCGCCGGAAAACAACTCGAGGA-TGGACGTACTCTTTCCGACTACA 1445 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| ||||| || ||||| ||||| |||| || Sbjct 1446 ACATCCAAAAGGAGTCGACCCTTCACTTGGTTCT 1479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445579406567280