Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq32786 93.3 8e-14 >seq32786 Length=16869 Score = 93.3 bits (102), Expect = 8e-14 Identities = 168/238 (71%), Gaps = 16/238 (7%) Strand=Plus/Plus Query 35333 ATCTGG-AACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATAC-GATAGAG 35390 |||||| |||| ||||| || ||||||||||| | | |||| ||| ||| ||| Sbjct 7291 ATCTGGGAACGA-AATGGTGATCGAGAATTTTTGGATAA-ACTCGGTTTTACTGATCGAG 7348 Query 35391 CAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT- 35449 ||| || ||||||||||| || ||||| || |||||||| |||||||| || ||||| Sbjct 7349 AAGAAGGCGATTTGGGACCGGTTTACGGTTTTCAATGGCGACATTTTGGAGCGAAATATA 7408 Query 35450 --GATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAA---TATAC 35504 ||| ||| | | ||||| ||| | ||| ||||||||||||| | ||| | Sbjct 7409 TCGAT---TGTCATACAAATTATGAAGGACAAGGTGTTGATCAATTGGCTGAAGTTATTC 7465 Query 35505 TAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCC 35562 | | | | ||||| | || ||| | ||||||| ||| || | || |||||||| Sbjct 7466 GACAAA---TTCGAGAAGAACCCGATAGTCGAAGGATCATTTTGTCAGCTTGGAATCC 7520 Score = 84.2 bits (92), Expect = 4e-11 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 35579 ATGGCTCTTCCTCCATGCCACATGAC-TGCTCAATTTTATGTGGCTAATGGAGAATTGTC 35637 |||| |||||| ||||| |||| | ||| |||||||||||| ||||||||||||||| Sbjct 8061 ATGGTTCTTCCACCATGTCACACAATGTGC-CAATTTTATGTGAATAATGGAGAATTGTC 8119 Query 35638 GTGCCAGTTGTATCAGCGAAGCGGAGAT 35665 ||| || |||||||| |||| |||||| Sbjct 8120 GTGTCAATTGTATCAAAGAAGTGGAGAT 8147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989158503928845