Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq31956 199 5e-46 seq32583 141 1e-28 >seq31956 Length=51777 Score = 199 bits (220), Expect = 5e-46 Identities = 565/856 (66%), Gaps = 19/856 (2%) Strand=Plus/Plus Query 62655 GCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTT 62714 ||| | | |||||| | || |||||| | |||||||| ||||| || ||| || || Sbjct 35790 GCTTGCTCACAACTTTCATCCAATGCAGCATAATAAATTGTTTCGAAAATCCGTTTGTTC 35849 Query 62715 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAAT 62774 | |||| || | | | |||||||| | | || || || || || ||| Sbjct 35850 AAATCTCTGGCAGCTTGAGAAGTGAATGGATATCTCATAAGCATGAAACAATCTGCCAAT 35909 Query 62775 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62834 ||||| ||||| | || || || | ||| | | |||| || ||| ||||| |||| Sbjct 35910 CCTTGTACACCTAATCCAATTGGACGATGACGCATATTTGAATTTTTGGCTTCAGGAACT 35969 Query 62835 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62894 ||||||||||| || || || || || || | ||||| | | | || || Sbjct 35970 GGATAATAATTGATGTCAATGATCTTGTTCAAGTTTCTTGTGAGAGCGCGAGCAACTTCA 36029 Query 62895 TTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACAGAT 62951 ||||||| ||||| || | || ||||||| ||||| |||| ||| Sbjct 36030 GCGAGTTTGACGAAATCGAAAGTCTTTTCAGGGGTTACAAATCGATTCAACGCAATTGAT 36089 Query 62952 GCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 63011 |||| |||||| || || || |||| | | || | || || || |||||||| | | Sbjct 36090 GCCAAATTACAAACCGCAACTTCATCTGGACTCGAAACTTCCATAATTTCAGTGCACAAA 36149 Query 63012 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63071 || || || || ||||| | ||||||||||||| | ||| ||| |||||| ||| Sbjct 36150 TTCGAGCATTTAATTGTTCCAATATTTTGTTGATTAGTTTTTCGATTAGCCGCATCTTTA 36209 Query 63072 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA-ATC--GCTTTCCAGACG 63128 || || | || | ||||| ||||| ||| ||| ||| | | ||| ||| | Sbjct 36210 TATGTGATATAAGGCATTCCAGTCTCAATTTGA--TTCGATACAACATGCTC-CCACAAT 36266 Query 63129 ACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC--TCTTTCGTATAGA--GTATACAA 63184 || || || | || ||| | || | |||| |||||| ||| || || | Sbjct 36267 TTTCTCGCTTTCAC---AGTTTT-TCTCACTTTTCCCTCTTTCTCATATTTGGTGTAAAG 36322 Query 63185 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAA 63244 ||||||||| || |||||||| | || | || ||||||| || ||||| | Sbjct 36323 AGCTTCGAACTCTTCACCCCAAACTTCATCGAGTCCTTGACATTCGCAAGGGCACATTAG 36382 Query 63245 CGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63303 |||||| ||| |||| || ||| || |||||||| || | ||| || | ||||||||| | Sbjct 36383 CGACCAATCTTCGTC-TCTTTCGACGCGTTTCATGAACAAATCTGGGACCCAAAGAGCCA 36441 Query 63304 TAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63363 || ||||| | | ||| | ||| || || || || || ||| ||| ||| Sbjct 36442 GGAAAAGATCGCGAGCTCTCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCGACGAATT 36501 Query 63364 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63423 | | |||||| | |||||| ||||| | || || || | | || || |||||||||| Sbjct 36502 CGAAAATATCGGCATGCCATGGTTCGAGATAAATAGCAAAGGCACCTGGACGTTTGTTTC 36561 Query 63424 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 63483 | || ||||| | ||||| || ||||| || ||||| | | |||||||| || ||| | Sbjct 36562 CACCTTGATCGACATATCTGGCTGTGTTGTTGTAAACGCGAAGCATTGGAACAAGACCAT 36621 Query 63484 TTGATATACCATTGGT 63499 ||||| | || ||||| Sbjct 36622 TTGATGTTCCGTTGGT 36637 Score = 138 bits (152), Expect = 1e-27 Identities = 296/439 (67%), Gaps = 9/439 (2%) Strand=Plus/Plus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||||| || | | ||| |||||||| || || | || |||| || || ||| Sbjct 35147 GCTGGTTTTGTTCTCAAATAATACATTCCAGTCTTCAATCCCTTCTTCCAACCATAGAAA 35206 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 ||||| || | || |||||| || | || ||||| ||||||| | ||| | Sbjct 35207 TGCATTGATGTGATCGCGGCATAACTTGGTTTAGCCATATGAATATTCAAACTTTGTGAT 35266 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| ||||| ||||| | ||||||||||| | || ||| ||||| | |||||| Sbjct 35267 TGATCAATGAAAGCTCCGCGATCTGCAGCCATCTCAATAATCTCTTTTTGCGATATTTCC 35326 Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATG 62300 |||| ||||| || ||||| || || || ||||| |||| |||| ||||| Sbjct 35327 CAAACTGTTTTGTACAACTC-TTTGATTTCAGTTGGAA--TTTGTTCAATATTTTGAATC 35383 Query 62301 GATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62360 |||||| | || | | ||| || || ||||||| ||||||| || Sbjct 35384 GATCCATTGCTGGCAATCAATCGATTTTTCATATCATCATCCCATAATCCAAGTTCAACC 35443 Query 62361 AAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTG 62420 ||| | | | | ||| || || || | |||||| || |||||||| || | |||| Sbjct 35444 AAATCCTTCAACAAATGTGGATTGACAATTTGGAAATCGCCAGACAAAACACGTCGAGAA 35503 Query 62421 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62480 || ||||| || || ||||| | |||||||| ||||| | |||||||| || || Sbjct 35504 TAGATATTGGAAGTGTATGGTTCAATTGACTCATTGTTTCCGAGGATTTGAGCTGTGGAA 35563 Query 62481 GCAGTCGGCATAGGTGCCA 62499 ||||| ||||| || |||| Sbjct 35564 GCAGTTGGCATTGGAGCCA 35582 >seq32583 Length=15821 Score = 141 bits (156), Expect = 1e-28 Identities = 356/533 (67%), Gaps = 15/533 (3%) Strand=Plus/Plus Query 33396 CCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33455 ||||||||| | ||| ||| || || ||||| |||||| | ||| | | |||| Sbjct 6669 CCCAATTCAACCAACAAATGATCAGCAACAAATTCGATATATTGTGACATAAGTCGACAA 6728 Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 ||||| || || | | ||| || | |||| |||| | ||||||||||| || || || Sbjct 6729 TTCATACCAATCATATCAACAGGCAAAGCCTCAGTCAAGAATTCTTGTTCGATTGAGACG 6788 Query 33516 GCATTTGTTATAATAA-ATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAA- 33573 |||| | | ||||| || | ||| ||| ||| | || | || | || Sbjct 6789 GCATCTTTGATAATTTCATAGATTCGTT-CTTGGCTCAATTTATTTTG-AAGCATCGAAT 6846 Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| | ||| |||||||| | ||| || || |||||||| ||| | || || ||| Sbjct 6847 ACAAAAGACAAGCGAAATCACGGTGAAGTCCTTCGTCTCTTGAAATGAGCTCATTTGAAT 6906 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 || | ||| ||||| | || | |||||| | ||| || || || || ||||| |||| Sbjct 6907 GAGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATTGAGGCAAATGAGCCGG 6966 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33753 | ||||| |||||||| || |||||||| ||||| | ||| || || | || | | Sbjct 6967 AGAAGAATATTCCTTCGACAGCAGCAAATGCAATTAATCTTTCAGCAAATGATGCATTTT 7026 Query 33754 CATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG-TTTC- 33808 || ||||| || |||||||| ||||||||||| | | ||| ||| Sbjct 7027 TATCAGAAATCCATTTCAAGGCCCAATCAGCCTTCTTTTT----GATGAATTCGAATTCG 7082 Query 33809 --TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33866 || ||||| || || | | | |||| | ||| || |||||| || ||||| Sbjct 7083 AAAATTGCATTGAAAAGTGAATGTCTTTCTTGTTCATCGCGAATATAAGTTTCAATCAAT 7142 Query 33867 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919 ||||||||| ||||||||||||||||| || || || ||||| || || Sbjct 7143 TTTGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTGGAATCCATAAAA 7195 Score = 109 bits (120), Expect = 7e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 || |||||||| || ||||||||| || || ||||| ||||| ||| | | ||| Sbjct 7397 AAGTTTTCATTGACAATTCCATCAGAAGCAGCGAAAAATGCCAAAACACGAGAAACAAAG 7456 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 34085 ||| ||| ||| | | ||| | |||||| || |||||||| | ||| |||||| Sbjct 7457 AATTGTTCATCTCCGTTCATTTTTTCCCAATCTTTCATATCTTTTCCCAAATCAACTTCT 7516 Query 34086 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 34145 || || ||||| |||||||| | ||||| || || | | ||| || ||||| || | Sbjct 7517 TCAACAGTCCAGAATGATGCAACAGCCTTCTTGTAAAACTCCCAAATTGTATGATGTTTG 7576 Query 34146 ATTGGGAAAATAACAAATCTATT 34168 | |||||||||||| |||| ||| Sbjct 7577 AGTGGGAAAATAACGAATCGATT 7599 Score = 93.3 bits (102), Expect = 5e-14 Identities = 106/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 33232 TTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTC---TTCTTGAGACATAACTCCCA 33288 || |||| |||||| | || | | ||| ||| || ||||| | |||||| || Sbjct 6427 TTGTTTAGAAGTCAGCTTCGAGATCAAATTGACGTTCAGATTCTTTTGTCATAACACCAG 6486 Query 33289 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33348 | |||| ||||| |||||||| ||||| ||||| |||||||| || | |||||||| Sbjct 6487 GTCTTTGATATTCGGAAACACGTTTCTCGAAGAAATTTGTTTTTCCGTCGATTGATATAT 6546 Query 33349 TTTCCATGAAATCAAACGGATT 33370 ||||||||||||| || ||||| Sbjct 6547 TTTCCATGAAATCGAATGGATT 6568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629553399389520