Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq31956 257 2e-63 seq32583 205 9e-48 >seq31956 Length=51777 Score = 257 bits (284), Expect = 2e-63 Identities = 980/1528 (64%), Gaps = 84/1528 (5%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| || |||| | || ||| || | ||||||||||| ||||||||||||||| Sbjct 35120 TCAACAGTAAATTGAACAGCATTCACAGCTGGTTTTGTTCTCAAATAATACATTCCAGTC 35179 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | ||| |||| || || |||||||| || | || || | || ||| Sbjct 35180 TTCAATCCCTTCTTCCAACCATAGAAATGCATTGATGTGATCGCGGCATAACTTGGTTTA 35239 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | |||| || ||| ||| |||||| || || || || | || || ||||| Sbjct 35240 GCCATATGAATATTCAAACTTTGTGATTGATCAATGAAAGCTCCGCGATCTGCAGCCATC 35299 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 || | ||| |||||| ||||| |||||||| ||||| || | | ||| || | | | Sbjct 35300 TCAATAATCTCTTTTTGCGATATTTCCCAAACTGTTTTGTACAACTCTTTGATTTCAGTT 35359 Query 37030 GGTAAATCT---AAATGTTGAATAGAACCATTA-TGTAACACAATTGTATTCTTTATGTC 37085 || | | | | || |||||| || ||||| || | |||| | ||| || || || Sbjct 35360 GGAATTTGTTCAATATTTTGAATCGATCCATTGCTGGCAATCAATCG-ATTTTTCATATC 35418 Query 37086 ATTATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143 || || ||| || | | | || | | || |||| | |||||||| |||| || Sbjct 35419 ATCATCCCA--TAATCCAAGTTCAACCAAATCCTTCAACAAATGTGGATTGACAATTTGG 35476 Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 ||||| ||||| || || | || | ||| |||||| ||| ||||||||||| |||||| Sbjct 35477 AAATCGCCAGACAAAACACGTCGAGAATAGATATTGGAAGTGTATGGTTCAATTGACTCA 35536 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263 || || | | ||||||| ||| || ||||| |||||||| || || ||||| ||| Sbjct 35537 TTGTTTCCGAGGATTTGAGCTGTGGAAGCAGTTGGCATTGGAGCCATGAGAAGAGAATTC 35596 Query 37264 CTCAATCCATGTGT-------------ATT-AAT----TC-------------------- 37285 | | ||||||| | ||| ||| || Sbjct 35597 CGGATTCCATGTCTAGAAAAAAAACCAATTGAATAGAATCATAATAAATATGAAAACAAC 35656 Query 37286 -----------TCTTTTTT---AGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAA 37331 |||||| | | |||||||||| ||| ||| ||||| | | Sbjct 35657 TTACTGTGCAATCTTTTGTCTCAAAACATTCCAATCACATTGATCAGTTGGTGTAACTCC 35716 Query 37332 CCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGG 37391 |||||||||| | || | || || || ||||| ||| |||||| ||| | Sbjct 35717 CCACATATCAAACTGCAAAACTCCCTTCGAAACTGGACTTCCGTCATATGTGGAATAGGT 35776 Query 37392 TCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAA 37451 ||| |||| ||| ||| | || ||||| || | ||| |||||||| ||||||||||| Sbjct 35777 TCCATAAAGTTTCGCTTGCTCACAACTTTCATCCAATGCAGCATAATAAATTGTTTCGAA 35836 Query 37452 AATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATAT-AA 37510 ||| || | || || | | || ||| | ||||| ||| | || | || || Sbjct 35837 AATCCGTTTGTTCAAATCTCTGGCAGCTTGAGAAGTGAATGGATATCTCATAAGCATGAA 35896 Query 37511 ACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAG 37570 ||| ||| ||||| || || ||||| | || || || | ||| | |||| || | Sbjct 35897 ACA-ATCTGCCAATCCTTGTACACCTAATCCAATTGGACGATGACGCATATTTGAATTTT 35955 Query 37571 ACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTA 37630 | ||| ||||||||||||||||| || || || || || | ||| || || Sbjct 35956 TGGCTTCAGGAACTGGATAATAATTGATGTCAATGATCTTGTTCAAGTTT----CTTGTG 36011 Query 37631 TTTTCGTAATTATTCTCAAC----TTGTCGAACAT--AAATACGTT--ATTATTAACAAA 37682 || | | ||| | ||| |||| || ||| | || | | ||||| Sbjct 36012 AGAGCGCGAGCAACTTCAGCGAGTTTGACGAA-ATCGAAAGTCTTTTCAGGGGTTACAAA 36070 Query 37683 TTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTG 37742 | | |||||| ||| ||| | | |||||| || |||||||||||| | || || Sbjct 36071 TCGATTCAACGCAATTGATGCCAAATTACAAACCGCAACTTCATCTGGACTCGAAACTTC 36130 Query 37743 TATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTT 37802 ||||| || || || | ||| || |||||||||| | ||| |||||| | ||| Sbjct 36131 CATAATTTCAGTGCACAAATTCGAGCATTTAATTGTTCCAATATTTTGTTGATTAGTTTT 36190 Query 37803 TTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGAT 37862 | |||| | |||||||||| ||||| ||| |||| || |||||| ||||| Sbjct 36191 TCGATTAGCCGCATCTTTATATGTGATATAAGGCATTCCAGTCTCAATTTGA--TTCGAT 36248 Query 37863 AATAGAT--TTCCATAAACTTCTTGCTTTAACGATCGCTTTAAtttttttCTTTGTTTCG 37920 | | || | ||| || |||| ||||| || | | | | |||| || | | || Sbjct 36249 ACAACATGCTCCCACAATTTTCTCGCTTTCACAGTTTTTCTCACTTTTCCCTCTTTCTCA 36308 Query 37921 TATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCG 37980 |||| | || | | || || | ||||| || || | |||| |||||||| Sbjct 36309 TATTTGGTGTAAAGAGCTTCGAACTCTTCACCCCAAACTTCATCGAGTCCTTGACATTCG 36368 Query 37981 CATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGT 38040 || || |||||||| ||||| ||||| ||| |||| ||||||| ||| || ||||| || Sbjct 36369 CAAGGGCACATTAGCGACCAATCTTCGTCTCTTTCGACGCGTTTCATGAACAAATCTGGG 36428 Query 38041 ACCCATA-ATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCT 38099 ||||| | | ||| ||| | ||| | ||| | |||||| || || || | Sbjct 36429 ACCCAAAGAGCCAGGAAA-AGATCGCGAGCTCTCTCTTCTTCTGGGCCAGTGTTTTTGCG 36487 Query 38100 TA-AGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTC 38158 | ||| | || ||||| ||||| || ||||||||||| | |||||| | | || | Sbjct 36488 GAGAGC-GACGAATTCGAAAATATCGGCATGCCATGGTTCGAGATAAATAGCAAAGGCAC 36546 Query 38159 CTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACA 38218 |||| | ||| | || || |||| | |||||| ||||||| || || | | | || Sbjct 36547 CTGGACGTTTGTTTCCACCTTGATCGACATATCTGGCTGTGTTGTTGTAAACGCGAAGCA 36606 Query 38219 TAGGTACTATACCATTAGATTTGCCGTT 38246 | || || | |||||| ||| | ||||| Sbjct 36607 TTGGAACAAGACCATTTGATGTTCCGTT 36634 >seq32583 Length=15821 Score = 205 bits (226), Expect = 9e-48 Identities = 384/559 (69%), Gaps = 13/559 (2%) Strand=Plus/Plus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 ||| | |||||||| || || || || ||| || || ||||| ||||| || ||| Sbjct 6657 ACTCTGTCACAACCCAATTCAACCAACAAATGATCAGCAACAAATTCGATATATTGTGAC 6716 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | | |||||||||||| || | ||| || || | ||| | ||||| || || | | Sbjct 6717 ATAAGTCGACAATTCATACCAATCATATCAACAGGCAAAGCCTCAGTCAAGAATTCTTGT 6776 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611 || || || ||||| |||| || | ||| ||| || | | || || | Sbjct 6777 TCGATTGAGACGGCATCTTTGATAATT----TCATAGATTCGTTCTTGGCTCAATTTATT 6832 Query 11612 ---AAATGTTTAA-ACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTAT 11667 || | || ||| | ||| || ||||||| || | ||||||||||| || Sbjct 6833 TTGAAGCATCGAATACAAAAGACAAGCGAAATCACGGTGAAGTCCTTCGTCTCTTGAAAT 6892 Query 11668 TAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGC 11727 || ||||| ||| || ||||| ||||||||||||| ||||| | ||| || || | Sbjct 6893 GAGCTCATTTGAATGAGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATTGA 6952 Query 11728 AGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCC 11787 |||||||| || || ||||||||||| || ||||| |||||||| | || |||||| | Sbjct 6953 GGCAAATGAGCCGGAGAAGAATATTCCTTCGACAGCAGCAAATGCAATTAATCTTTCAGC 7012 Query 11788 A---TATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCA 11844 | || | || || ||| |||||||| |||||||||||| |||||||| | | | Sbjct 7013 AAATGATGCATTTTTATCAGAAATCCATTTCAAGGCCCAATCAGCCTTCTTTTTGATGAA 7072 Query 11845 TTCCATTGTTTCTATAGCGTTAAATAAATGCAT-TTTTTCTATATTATCTCTTACATATG 11903 ||| | | || || || || || || || | ||||| | ||| | | ||| | Sbjct 7073 TTCGAATTCGAAAATTGCATTGAA-AAGTGAATGTCTTTCTTGTTCATCGCGAATATAAG 7131 Query 11904 TATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCAT 11963 | || || ||| |||||||||||||||||| ||||| || || ||||| ||||||| Sbjct 7132 TTTCAATCAATTTTGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTGGAATCCAT 7191 Query 11964 AGAAACATCGTGCCTCTGA 11982 | || |||| || ||||| Sbjct 7192 AAAAGAATCGGGCTTCTGA 7210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468328259702960