Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq31956 233 3e-56 seq32583 156 6e-33 >seq31956 Length=51777 Score = 233 bits (258), Expect = 3e-56 Identities = 573/857 (67%), Gaps = 19/857 (2%) Strand=Plus/Plus Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 65507 ||| | |||||||| | || |||||| | |||||||| |||||||| ||| || || Sbjct 35790 GCTTGCTCACAACTTTCATCCAATGCAGCATAATAAATTGTTTCGAAAATCCGTTTGTTC 35849 Query 65508 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 65567 | |||| || | | | |||||||| | | || || || ||||| ||| Sbjct 35850 AAATCTCTGGCAGCTTGAGAAGTGAATGGATATCTCATAAGCATGAAACAATCTGCCAAT 35909 Query 65568 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 65627 ||||| ||||| | || || || | ||| | | |||| || ||| ||||| |||| Sbjct 35910 CCTTGTACACCTAATCCAATTGGACGATGACGCATATTTGAATTTTTGGCTTCAGGAACT 35969 Query 65628 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 65687 ||||||||||| || || || || || || | ||||| | | | || || Sbjct 35970 GGATAATAATTGATGTCAATGATCTTGTTCAAGTTTCTTGTGAGAGCGCGAGCAACTTCA 36029 Query 65688 TTCAGTTTGAGAAAATCAAATCGCTCATCTA---TTACAAACATGTTCAATGCAACAGAT 65744 ||||||| ||||| || || || ||||||| ||||| |||| ||| Sbjct 36030 GCGAGTTTGACGAAATCGAAAGTCTTTTCAGGGGTTACAAATCGATTCAACGCAATTGAT 36089 Query 65745 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 65804 |||| ||||||||| || || |||| | | || | || || || |||||||| | | Sbjct 36090 GCCAAATTACAAACCGCAACTTCATCTGGACTCGAAACTTCCATAATTTCAGTGCACAAA 36149 Query 65805 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 65864 || || || || ||||| | ||||||||||||| | ||| ||| |||||| ||| Sbjct 36150 TTCGAGCATTTAATTGTTCCAATATTTTGTTGATTAGTTTTTCGATTAGCCGCATCTTTA 36209 Query 65865 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA-ATC--GCTTTCCAGACG 65921 || || | || | ||||| ||||| ||| ||| ||| | | ||| ||| | Sbjct 36210 TATGTGATATAAGGCATTCCAGTCTCAATTTGA--TTCGATACAACATGCTC-CCACAAT 36266 Query 65922 ACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC--TCTTTCGTATAGT--GTATACAA 65977 || || || | || ||| | || |||||| |||||| ||| | || || | Sbjct 36267 TTTCTCGCTTTCAC---AGTTTT-TCTCACTTTTCCCTCTTTCTCATATTTGGTGTAAAG 36322 Query 65978 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 66037 ||||||||| || |||||||| | || | ||| ||||||| || ||||| | Sbjct 36323 AGCTTCGAACTCTTCACCCCAAACTTCATCGAGTCCTTGACATTCGCAAGGGCACATTAG 36382 Query 66038 CGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 66096 |||||| ||| |||| || ||| || |||||||| || | ||| || | ||||||||| | Sbjct 36383 CGACCAATCTTCGTC-TCTTTCGACGCGTTTCATGAACAAATCTGGGACCCAAAGAGCCA 36441 Query 66097 TAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 66156 || | ||| | | ||| | ||| || || || || || ||| ||| ||| Sbjct 36442 GGAAAAGATCGCGAGCTCTCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCGACGAATT 36501 Query 66157 CCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 66216 | | |||||| |||||| ||||| | || || || | | || || |||||||||| Sbjct 36502 CGAAAATATCGGCATGCCATGGTTCGAGATAAATAGCAAAGGCACCTGGACGTTTGTTTC 36561 Query 66217 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 66276 | || ||||| | ||||| || ||||| || ||||| | | |||||||| || ||||| Sbjct 36562 CACCTTGATCGACATATCTGGCTGTGTTGTTGTAAACGCGAAGCATTGGAACAAGACCAT 36621 Query 66277 TGGATGTACCATTGGTC 66293 | ||||| || |||||| Sbjct 36622 TTGATGTTCCGTTGGTC 36638 Score = 141 bits (156), Expect = 1e-28 Identities = 297/439 (68%), Gaps = 9/439 (2%) Strand=Plus/Plus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || ||||| || | | ||| |||||||| || || | || |||| || || ||| Sbjct 35147 GCTGGTTTTGTTCTCAAATAATACATTCCAGTCTTCAATCCCTTCTTCCAACCATAGAAA 35206 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 ||||| || | || |||||| || | || ||||| ||||||| | ||| | Sbjct 35207 TGCATTGATGTGATCGCGGCATAACTTGGTTTAGCCATATGAATATTCAAACTTTGTGAT 35266 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| ||||| ||||| | ||||||||||| | || ||| ||||| | |||||| Sbjct 35267 TGATCAATGAAAGCTCCGCGATCTGCAGCCATCTCAATAATCTCTTTTTGCGATATTTCC 35326 Query 65040 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATG 65093 |||| ||||| || ||||| || || || ||||| |||| |||| ||||| Sbjct 35327 CAAACTGTTTTGTACAACTC-TTTGATTTCAGTTGGAA--TTTGTTCAATATTTTGAATC 35383 Query 65094 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 65153 |||||| || || | | ||| || || ||||||| ||||||| || Sbjct 35384 GATCCATTGCTGGCAATCAATCGATTTTTCATATCATCATCCCATAATCCAAGTTCAACC 35443 Query 65154 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 65213 ||| | | | | ||| ||||| || | ||| || || |||||||| || | |||| Sbjct 35444 AAATCCTTCAACAAATGTGGATTGACAATTTGGAAATCGCCAGACAAAACACGTCGAGAA 35503 Query 65214 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 65273 || ||||| || || ||||| | |||||||| ||||| | |||||||| || || Sbjct 35504 TAGATATTGGAAGTGTATGGTTCAATTGACTCATTGTTTCCGAGGATTTGAGCTGTGGAA 35563 Query 65274 GCAGTCGGCATAGGTGCCA 65292 ||||| ||||| || |||| Sbjct 35564 GCAGTTGGCATTGGAGCCA 35582 >seq32583 Length=15821 Score = 156 bits (172), Expect = 6e-33 Identities = 358/536 (67%), Gaps = 21/536 (4%) Strand=Plus/Plus Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031 ||||||||| | ||| ||| || |||||||| |||||| | ||| | | |||| Sbjct 6669 CCCAATTCAACCAACAAATGATCAGCAACAAATTCGATATATTGTGACATAAGTCGACAA 6728 Query 36032 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 36091 ||||| || || | | ||| || | |||| |||| | ||||||||||| || ||||| Sbjct 6729 TTCATACCAATCATATCAACAGGCAAAGCCTCAGTCAAGAATTCTTGTTCGATTGAGACG 6788 Query 36092 GCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 36151 || ||| | ||||| | | | ||| | || ||| | |||| || || || | Sbjct 6789 GCATCTTTGATAATT----TCATAGATTCGTT-CT---TGGCT-CAATTTATTTTGAAGC 6839 Query 36152 ATCAAA---------CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202 ||| || || |||||||| | ||| || || |||||||| ||| | || Sbjct 6840 ATCGAATACAAAAGACAAGCGAAATCACGGTGAAGTCCTTCGTCTCTTGAAATGAGCTCA 6899 Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 36262 || ||| || | ||| ||||| | || | |||||| | ||| || || || |||||| Sbjct 6900 TTTGAATGAGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATTGAGGCAAAT 6959 Query 36263 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 36322 || || || ||||| |||||||| || || ||||| ||||| | ||| || || | Sbjct 6960 GAGCCGGAGAAGAATATTCCTTCGACAGCAGCAAATGCAATTAATCTTTCAGCAAATGAT 7019 Query 36323 GCACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 36379 ||| | | || ||||| || |||||||| ||||||||||| | | | | Sbjct 7020 GCATTTTTATCAGAAATCCATTTCAAGGCCCAATCAGCCTTCTTTTTGATGAATTCGAAT 7079 Query 36380 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 36439 || ||||| || || | | | |||| | ||| || ||| || |||||| Sbjct 7080 TCGAAAATTGCATTGAAAAGTGAATGTCTTTCTTGTTCATCGCGAATATAAGTTTCAATC 7139 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 || ||||||||| ||||||||||||||||| || ||||| ||||| || || Sbjct 7140 AATTTTGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTGGAATCCATAAAA 7195 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 35808 TTCTTTAAAAATCAACATCTAGAGAAAAATGATTGTC---TTCTTGAGACATAACTCCCA 35864 || |||| || ||| | || ||| ||| ||| || ||||| | |||||| || Sbjct 6427 TTGTTTAGAAGTCAGCTTCGAGATCAAATTGACGTTCAGATTCTTTTGTCATAACACCAG 6486 Query 35865 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 35924 | |||| ||||| |||||||| ||||| ||||| ||||| || || | |||||||| Sbjct 6487 GTCTTTGATATTCGGAAACACGTTTCTCGAAGAAATTTGTTTTTCCGTCGATTGATATAT 6546 Query 35925 TTTCCATGAAATCGAATGGATT 35946 |||||||||||||||||||||| Sbjct 6547 TTTCCATGAAATCGAATGGATT 6568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657896704737560