Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq13386 104 2e-17 >seq13386 Length=19191 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| ||||| | || || |||||||||||||| || ||| Sbjct 12199 CCTCCTCTGAGACGAAGAACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAG 12258 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| | ||||| || || |||||| | ||| || || || || Sbjct 12259 AGGGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGG 12318 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | ||| | | ||| | || || | | ||| || Sbjct 12319 ATTCCTTCTTTGTC-TTGAATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAAC 12377 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | ||||| |||||||| ||||| || || ||||||||| Sbjct 12378 TTCAAGGGTGATGGTCTTTCCGGTCAAAGTTTTGACAAAGATTTGCATA 12426 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | || ||||| | || ||||||||||| ||||| || ||| Sbjct 13520 CCTCCTCTGAGACGAAGGACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAG 13579 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | ||||| || ||| | |||| | ||| || || || || Sbjct 13580 AGAGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGTGGA 13639 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||||| ||| | | ||| | |||||| | | || || Sbjct 13640 ATTCCTTCTTTATC-TTGAATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAAC 13698 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || ||||| ||||| || || ||||||||| Sbjct 13699 TTCCAATGTGATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCATA 13747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495855907352800