Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq31956 248 1e-60 seq32583 150 3e-31 >seq31956 Length=51777 Score = 248 bits (274), Expect = 1e-60 Identities = 576/853 (68%), Gaps = 23/853 (3%) Strand=Plus/Plus Query 79333 TCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCT 79392 |||||||| | || ||||| | |||||||| |||||||||||| || || | |||| Sbjct 35796 TCACAACTTTCATCCAATGCAGCATAATAAATTGTTTCGAAAATCCGTTTGTTCAAATCT 35855 Query 79393 TGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 79452 || || | | |||||||| | | || || || ||||| |||||||| Sbjct 35856 CTGGCAGCTTGAGAAGTGAATGGATATCTCATAAGCATGAAACAATCTGCCAATCCTTGT 35915 Query 79453 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAA 79512 ||||| | || || || | ||| | | |||| ||| ||| ||||| |||| |||||| Sbjct 35916 ACACCTAATCCAATTGGACGATGACGCATATTTGAATTTTTGGCTTCAGGAACTGGATAA 35975 Query 79513 TAATTAATATCTATAATTTTATTGA-GATTCCTGACTATTACTTTGACCA-CATCCTTTA 79570 ||||| || || || || || || | | ||| || | | || || | || | Sbjct 35976 TAATTGATGTCAATGATCTTGTTCAAGTTTCTTG--TGAGAGCGCGAGCAACTTCAGCGA 36033 Query 79571 GTTTGAGAAAATCAAA--TCGTC-CATCTATTACAAACATGTTCAACGCGACAGATGCCA 79627 |||||| ||||| || || | || ||||||| |||||||| | ||||||| Sbjct 36034 GTTTGACGAAATCGAAAGTCTTTTCAGGGGTTACAAATCGATTCAACGCAATTGATGCCA 36093 Query 79628 GATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTAC 79687 ||||||||| || || |||| | | || | || || ||||||||||| | || Sbjct 36094 AATTACAAACCGCAACTTCATCTGGACTCGAAACTTCCATAATTTCAGTGCACAAATTCG 36153 Query 79688 TACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 79747 || ||||| ||||| | ||||||||||||| | ||| ||| |||||| ||||| Sbjct 36154 AGCATTTAATTGTTCCAATATTTTGTTGATTAGTTTTTCGATTAGCCGCATCTTTATATG 36213 Query 79748 GAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATA-ATC--GCTTTCCAGACGACTC 79804 || | || | ||||| ||||| ||| ||| ||| | | ||| ||| | || Sbjct 36214 TGATATAAGGCATTCCAGTCTCAATTTGA--TTCGATACAACATGCTC-CCACAATTTTC 36270 Query 79805 GAGCCTTTATTATAGACTTGTATCTCTTTTC--TCTTTCG--TATTGTGTATATAATCGT 79860 || || | | || | || |||||| |||||| |||| || || | | Sbjct 36271 TCGCTTTCACAGT----TTTTCTCACTTTTCCCTCTTTCTCATATTTGGTGTAAAGAGCT 36326 Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 |||||||| || |||||||| || || | ||| |||||||| ||| ||||| | |||| Sbjct 36327 TCGAACTCTTCACCCCAAACTTCATCGAGTCCTTGACATTCGCAAGGGCACATTAGCGAC 36386 Query 79921 CACTCTCCATCATCCTTT-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 || ||| | || || || || |||||||| || | ||| || | ||||||||| | || Sbjct 36387 CAATCTTCGTC-TCTTTCGACGCGTTTCATGAACAAATCTGGGACCCAAAGAGCCAGGAA 36445 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 ||||| | | ||| | || || || || || || ||| ||| ||| | | Sbjct 36446 AAGATCGCGAGCTCTCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCGACGAATTCGAA 36505 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 |||||| | |||||| ||||| | || || || | | || || ||||||||||| || Sbjct 36506 AATATCGGCATGCCATGGTTCGAGATAAATAGCAAAGGCACCTGGACGTTTGTTTCCACC 36565 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 ||||| | ||||| || ||||| || ||||| | | |||||||| || |||||| || Sbjct 36566 TTGATCGACATATCTGGCTGTGTTGTTGTAAACGCGAAGCATTGGAACAAGACCATTTGA 36625 Query 80160 TGTACCATTGGTC 80172 ||| || |||||| Sbjct 36626 TGTTCCGTTGGTC 36638 Score = 233 bits (258), Expect = 3e-56 Identities = 432/632 (68%), Gaps = 4/632 (1%) Strand=Plus/Plus Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 ||| ||||| || || |||| ||||| ||||| ||| |||| | ||||| ||||| || Sbjct 36736 ACCGATTCCACCAGCATTTTTCGAGATCAATGCACATTGTTTCAGAGTATCGTAGATTCC 36795 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 | || |||||| |||| | || | ||| || |||||||| | |||| ||| Sbjct 36796 CAAGATCGAATCATCGCTCATTGTTAGCAAAAAGCAAGATGACATTTGTGGCCGACGAGT 36855 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 ||||| || || || || || ||||| || || | || | || |||| |||||||| Sbjct 36856 TCCCGAGTTGAACAATGTTGGCGAAGCATGTGTCATATATCTCTCCGACATGAGATTGTA 36915 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 || || || |||| || | ||| | |||||||| || | || | ||| ||||| Sbjct 36916 GGTTTCGATGGCTGCATCAACATCGTCTCCGTGAATTCCAACAGAAACTCTCATCAACAT 36975 Query 80457 GTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 || || || | ||| ||||| | | || |||||||| | || ||| |||||| ||| Sbjct 36976 TTGTTGTGGGCGTTCGACGATTTGATCATCGATTTTCAAAAGATACGATCTTTCCAGAGT 37035 Query 80517 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 80576 ||| |||||||| || ||||||| | || || ||||||| || | ||||| ||||| Sbjct 37036 TTTGAAACCAAAGAAGGTGTATGAGTAATCGCGATCGTAAACGATGGCTGAGTTAAGTTT 37095 Query 80577 ATCCTTATATTTGTTAACTACATCCATGGTGATACTTGA--AATAATCGGAGAATGTTTC 80634 ||| || ||| ||| | || || | ||||| ||| || |||||||||| Sbjct 37096 ATCTGCATTTTTCATAATTGTATTGTAAGT--TTCTTGACTAATCATTGGAGAATGTTGT 37153 Query 80635 CCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 80694 || | ||||| | | | | | ||| | |||||||||| || | ||| ||| Sbjct 37154 CCGGTCAAAGGATGATGGAATTCGTACAAAGTTTTCATCACTTCAGAGAAAACTTTGTTT 37213 Query 80695 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGT 80754 |||| |||||| | || || || || ||||| || || | || ||||| ||||||||| Sbjct 37214 GTTTTCTTGTGCAAGTTAGAAACAGCAATTCTTGCAGCAAGAAGAGCATATTCTGGATGT 37273 Query 80755 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 80814 || || || | || || |||| || || ||| | |||||||| || |||||||| Sbjct 37274 TGAGTTGTCATTGAAGCGGCGGTTTCAGCGGCAAGATTATCCAATTCAACAGTTGTTACA 37333 Query 80815 CCATTATATATTCCTTGGATAACCTTCATAGC 80846 || || || | ||| ||| || || || || Sbjct 37334 CCTTTGTACAATCCACTGATGACTTTGATGGC 37365 Score = 141 bits (156), Expect = 1e-28 Identities = 297/439 (68%), Gaps = 9/439 (2%) Strand=Plus/Plus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 || ||||| || | | ||| |||||||| || || | || |||| || |||||| Sbjct 35147 GCTGGTTTTGTTCTCAAATAATACATTCCAGTCTTCAATCCCTTCTTCCAACCATAGAAA 35206 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858 ||||| || | || |||||| || | || ||||| ||||||| | ||| | Sbjct 35207 TGCATTGATGTGATCGCGGCATAACTTGGTTTAGCCATATGAATATTCAAACTTTGTGAT 35266 Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| ||||| ||||| | ||||||||||| | || ||| ||||| | |||||| Sbjct 35267 TGATCAATGAAAGCTCCGCGATCTGCAGCCATCTCAATAATCTCTTTTTGCGATATTTCC 35326 Query 78919 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATG 78972 |||| ||||| || ||||| || || || ||||| |||| |||| ||||| Sbjct 35327 CAAACTGTTTTGTACAACTC-TTTGATTTCAGTTGGAA--TTTGTTCAATATTTTGAATC 35383 Query 78973 GATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTT 79032 |||||| || || | | ||| || || || |||| ||||||| || Sbjct 35384 GATCCATTGCTGGCAATCAATCGATTTTTCATATCATCATCCCATAATCCAAGTTCAACC 35443 Query 79033 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 79092 ||| | | | | ||| ||||| || | ||| || || |||||||| || | |||| Sbjct 35444 AAATCCTTCAACAAATGTGGATTGACAATTTGGAAATCGCCAGACAAAACACGTCGAGAA 35503 Query 79093 TAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGAT 79152 || ||||| || |||||||| | || ||||| ||||| | |||||||| || || Sbjct 35504 TAGATATTGGAAGTGTATGGTTCAATTGACTCATTGTTTCCGAGGATTTGAGCTGTGGAA 35563 Query 79153 GCCGTTGGCATAGGTGCCA 79171 || |||||||| || |||| Sbjct 35564 GCAGTTGGCATTGGAGCCA 35582 >seq32583 Length=15821 Score = 150 bits (166), Expect = 3e-31 Identities = 362/542 (67%), Gaps = 33/542 (6%) Strand=Plus/Plus Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 ||||||||| | ||| ||| || |||||||| |||||| | ||| | | |||| Sbjct 6669 CCCAATTCAACCAACAAATGATCAGCAACAAATTCGATATATTGTGACATAAGTCGACAA 6728 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || || | | ||| || | |||| |||| | ||||||||||| || || || Sbjct 6729 TTCATACCAATCATATCAACAGGCAAAGCCTCAGTCAAGAATTCTTGTTCGATTGAGACG 6788 Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953 |||||| | ||||| | | | ||| | || ||| | |||| || || || | Sbjct 6789 GCATCTTTGATAATT----TCATAGATTCGTT-CT---TGGCT-CAATTTATTTTGAAGC 6839 Query 49954 ATCAAA---------CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 ||| || || |||||||| | ||| || || |||||||| ||| || || Sbjct 6840 ATCGAATACAAAAGACAAGCGAAATCACGGTGAAGTCCTTCGTCTCTTGAAATGAGCTCA 6899 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 || ||| || | ||| ||||| | || | |||||| | ||| || || || |||||| Sbjct 6900 TTTGAATGAGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATTGAGGCAAAT 6959 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 || || || ||||| |||||||| || || ||||| |||| | ||| || || | || Sbjct 6960 GAGCCGGAGAAGAATATTCCTTCGACAGCAGCAAATGCAATTAATCTTTCAGCAAA--TG 7017 Query 50125 GCGC-----TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA 50179 || | ||| ||||| || |||||||| ||||||||||| | | Sbjct 7018 ATGCATTTTTATCAGAAATCCATTTCAAGGCCCAATCAGCCTTCTTTTT----GATGAAT 7073 Query 50180 TCG-TTTC---TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTA 50235 ||| ||| || ||||| || || | | | |||| | ||| || |||||| Sbjct 7074 TCGAATTCGAAAATTGCATTGAAAAGTGAATGTCTTTCTTGTTCATCGCGAATATAAGTT 7133 Query 50236 TCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAG 50295 || ||||| ||||||||| ||||||||||||||||| || || || ||||| || Sbjct 7134 TCAATCAATTTTGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTGGAATCCATAA 7193 Query 50296 AA 50297 || Sbjct 7194 AA 7195 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 49610 TTCTTTAAAAGTCAACATCTAGAGAAAAATGATTATC---TTCTTGAGACATAACTCCCA 49666 || |||| |||||| | || ||| ||| ||| || ||||| | |||||| || Sbjct 6427 TTGTTTAGAAGTCAGCTTCGAGATCAAATTGACGTTCAGATTCTTTTGTCATAACACCAG 6486 Query 49667 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 49726 | |||| ||||| |||||||| ||||| ||||| |||||||| || | |||||||| Sbjct 6487 GTCTTTGATATTCGGAAACACGTTTCTCGAAGAAATTTGTTTTTCCGTCGATTGATATAT 6546 Query 49727 TTTCCATGAAATCAAACGGATT 49748 ||||||||||||| || ||||| Sbjct 6547 TTTCCATGAAATCGAATGGATT 6568 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 50344 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 50403 || |||||||| || ||||| ||| || || ||||| ||||| ||| | | ||| Sbjct 7397 AAGTTTTCATTGACAATTCCATCAGAAGCAGCGAAAAATGCCAAAACACGAGAAACAAAG 7456 Query 50404 TGTTTTTCGT-TGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTC 50462 || ||| | | || | | ||| | |||||| || |||||||| | ||| ||||| Sbjct 7457 AATTGTTCATCTCCGT-TCATTTTTTCCCAATCTTTCATATCTTTTCCCAAATCAACTTC 7515 Query 50463 TTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTG 50522 ||| || ||||| |||||||| | ||||| || || | | ||| || ||||| || Sbjct 7516 TTCAACAGTCCAGAATGATGCAACAGCCTTCTTGTAAAACTCCCAAATTGTATGATGTTT 7575 Query 50523 GATTGGGAAAATAACAAATCTATT 50546 || |||||||||||| |||| ||| Sbjct 7576 GAGTGGGAAAATAACGAATCGATT 7599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717967495216760