Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq32583 221 1e-52 >seq32583 Length=15821 Score = 221 bits (244), Expect = 1e-52 Identities = 414/594 (70%), Gaps = 22/594 (4%) Strand=Plus/Plus Query 13673 CACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGA 13732 |||| | |||||||| | ||| | | || |||||||| ||| || |||||||| || Sbjct 6656 CACTCTGTCACAACCCAATTCAACCAACAAATGATCAGCAACAAATTCGATATATTGTGA 6715 Query 13733 CATTAAATC-ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTT 13791 ||| || || |||||||||||| || | | ||||| | | || || ||||||| Sbjct 6716 CAT-AAGTCGACAATTCATACCAATCATATCAACAGGCAAAGCCTCAGTCAAGAATTCTT 6774 Query 13792 TTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATT 13851 ||| || || || || ||||| ||||| || | | || | | | |||| Sbjct 6775 GTTCGATTGAGACGGCATCTTTGATAAT--TTCATAGATTCGTTCTTGGCTCAATTTATT 6832 Query 13852 TT--AG-AT-GTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTA 13907 || || || | || ||| | ||| || ||||||| ||||| || || ||||| | Sbjct 6833 TTGAAGCATCGAATACAAA--AGACAAGCGAAATCACGGTGAAGTCCTTCGTCTCTTGAA 6890 Query 13908 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13967 || || || |||||| || ||||||||||||||||||| ||||| ||||| || ||| Sbjct 6891 ATGAGCTCATTTGAATGAGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATT 6950 Query 13968 GCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14027 | |||||||| ||||| ||||||||||| || || |||||||| || ||||||| ||| Sbjct 6951 GAGGCAAATGAGCCGGAGAAGAATATTCCTTCGACAGCAGCAAATGCAATTAATCTTTCA 7010 Query 14028 CCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATA 14087 |||| ||||| ||||| | || |||||||| ||||| |||| || ||||| || Sbjct 7011 GCAAATGATGCATTTTTATCAGAAATCCATTTCAAGGCCCAATCAGCCTTCTTTTTGATG 7070 Query 14088 AAATCCATTGTTTCAATAGCATT---AAATAAATATTCCTTCTCTTTAGTACTTGAAATG 14144 || || | | ||| ||||| || | ||| || |||| || | | | ||| Sbjct 7071 AATTCGAATTCGAAAATTGCATTGAAAAGTGAAT-GTCTTTCTTGTTCAT-CGCG-AATA 7127 Query 14145 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAA 14204 || || ||||| | | ||||||||| || || |||||||| || || || || || Sbjct 7128 TAAGTTTCAATCAATTTTGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTGGAAT 7187 Query 14205 CCATAAAAGCATCTAGCTTCCGACCATTGTACTTC---CGAGTAAAATCTTTCG 14255 ||||||||| ||| ||||| || || ||||| |||| ||||||||| Sbjct 7188 CCATAAAAGAATCGGGCTTCTGAGACTTTGACTTCATTCGAG---AATCTTTCG 7238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479526760100600