Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq32583 228 8e-55 >seq32583 Length=15821 Score = 228 bits (252), Expect = 8e-55 Identities = 400/568 (70%), Gaps = 26/568 (5%) Strand=Plus/Plus Query 13461 CACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGA 13520 |||| | |||||||| | ||| | || || |||||||| ||| || |||||||| || Sbjct 6656 CACTCTGTCACAACCCAATTCAACCAACAAATGATCAGCAACAAATTCGATATATTGTGA 6715 Query 13521 CATTAAATC-ACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTT 13579 ||| || || |||||||||||| || | | ||||| | | ||| || ||||||| Sbjct 6716 CAT-AAGTCGACAATTCATACCAATCATATCAACAGGCAAAGCCTCAGTCAAGAATTCTT 6774 Query 13580 TTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGAT--A 13637 ||| || || || || || || ||||| || ||| || || | || | Sbjct 6775 GTTCGATTGAGACGGCATCTTTGATAAT----TTCATAGATTCGTTCTTGGCTCAATTTA 6830 Query 13638 TTTT--AG-AT-GTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTAC 13693 |||| || || | || ||| | ||| || ||||||| ||||| || || ||||| Sbjct 6831 TTTTGAAGCATCGAATACAAA--AGACAAGCGAAATCACGGTGAAGTCCTTCGTCTCTTG 6888 Query 13694 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13753 ||| || || |||||| || ||||||||||||||||||| ||||| ||||| || | Sbjct 6889 AAATGAGCTCATTTGAATGAGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAA 6948 Query 13754 TTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTT 13813 ||| || ||||| ||||| ||||||||||| || || |||||||| || |||| || || Sbjct 6949 TTGAGGCAAATGAGCCGGAGAAGAATATTCCTTCGACAGCAGCAAATGCAATTAATCTTT 7008 Query 13814 CTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 13873 | |||| ||||| ||||| | || |||||||| ||||| |||| || ||||| | Sbjct 7009 CAGCAAATGATGCATTTTTATCAGAAATCCATTTCAAGGCCCAATCAGCCTTCTTTTTGA 7068 Query 13874 TAAAATCCATTGTTTCG---ATTGCATTGAA---TAAATGTTCCTTCTCTTTAGTACTTG 13927 | || || | |||| ||||||||||| | |||| || |||| || | | | Sbjct 7069 TGAATTCGA---ATTCGAAAATTGCATTGAAAAGTGAATG-TCTTTCTTGTTCAT-CGCG 7123 Query 13928 AAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCT 13987 ||| || || ||||| | | ||||||||| || || |||||||| || || || | Sbjct 7124 -AATATAAGTTTCAATCAATTTTGAATACATTTCTGAATGAATGTTTTCAATTGCAATTT 7182 Query 13988 GAAAACCATAAAAACATCTAGCTTCTGA 14015 | || |||||||| ||| |||||||| Sbjct 7183 GGAATCCATAAAAGAATCGGGCTTCTGA 7210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478388037980760