Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq16010 107 1e-18 seq13386 107 1e-18 >seq16010 Length=816 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||||| || |||||||| | |||||||| || | || | | | || ||| Sbjct 156 ACCAAATGGAGTGTTGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCTTCC 215 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| |||||||||||||||| ||||||| | || | ||||| || || Sbjct 216 AATTGTTTTCCGGCAAAAATCAATCTTTGTTGATGTGGTGGGATTCCTTCGTTATCTTGA 275 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || ||||||| | ||| ||||||| ||| ||||| || | || ||||||||| Sbjct 276 ATTTTTGCTTTGACATTTTCAATTGTGTCGGAAGCTTCGACTTCGAGTGTGATAGTTTTT 335 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | ||||| || | |||||||| Sbjct 336 CCAGTCAATGTTTTGACGACGATTTGCAT 364 >seq13386 Length=19191 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| || ||||| |||| || |||||||| | ||| ||||| || Sbjct 13011 CCTCCTCTCAATCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATCCGAA 13070 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || ||||||||||| ||||| || ||||||| ||||| || | || Sbjct 13071 AGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGA 13130 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | ||||| | ||| ||||| ||| ||||| Sbjct 13131 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCGACT 13190 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| ||||| || || || || ||||||||||| Sbjct 13191 TCCAAGGTGATAGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCAT 13237 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| ||| ||| ||||| | ||||| ||||| | || | | | || ||| Sbjct 13538 ACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCC 13597 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| |||||||||||||||| ||||| || | || | |||||||| || Sbjct 13598 AATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGA 13657 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || ||||||| | ||| |||||| ||| || || || | || || |||||| Sbjct 13658 ATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACTTCCAATGTGATGGTTTTT 13717 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | ||||| ||||| |||||||| Sbjct 13718 CCAGTCAATGTTTTGACAAAGATTTGCAT 13746 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | |||||||| |||||||| ||| | || ||||||||||| ||||||||| Sbjct 13784 TCCTTTTGGATGTTGTAATCAGACAATGTGCGTCCATCTTCCAATTGTTTTCCGGCAAAA 13843 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | || |||||||| | || | ||||| || || |||| ||||||| | Sbjct 13844 ATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACATTT 13903 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| ||| || || || | || || |||||||| || || || || || Sbjct 13904 TCGATGGTGTCAGAAGCTTCAACTTCAAGTGTGATTGTTTTTCCAGTGAGTGTCTTGACG 13963 Query 43099 AAAATTTGCATT 43110 || ||||||||| Sbjct 13964 AAGATTTGCATT 13975 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| || ||||| || | || || ||||| | ||||| ||||| Sbjct 13976 CCTCCTCTCAATCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGGAG 14035 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || ||||||||||| ||||| || ||||||| ||||| || | || Sbjct 14036 AGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGA 14095 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | ||||| | ||| || || ||| ||||| Sbjct 14096 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGACT 14155 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || |||||||| || | |||||| ||||| ||||||||| Sbjct 14156 TCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCATT 14203 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| || || ||||| | ||||| ||||| | || | | |||| ||| Sbjct 12217 ACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTTCCGTCTTCC 12276 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| ||||| || ||||||| ||||| || | || | |||||||| || Sbjct 12277 AATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGA 12336 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || ||||||| | | | || || |||||| || || | || || || ||| Sbjct 12337 ATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAACTTCAAGGGTGATGGTCTTT 12396 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| | |||||| ||||| |||||||| Sbjct 12397 CCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | ||| |||||||| | ||||| ||||| Sbjct 11971 CCACCACGAAGGCGAAGAACCAAATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAG 12030 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || ||||||||||| ||||| || || | || |||||||| | || Sbjct 12031 AGAGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGGG 12090 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | ||||| | | | ||||| || ||||| Sbjct 12091 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAGGCTTCGACT 12150 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| ||||| || || || || |||||||||||| Sbjct 12151 TCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCATT 12198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381213619714422