Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq31956 233 3e-56 seq32583 147 3e-30 >seq31956 Length=51777 Score = 233 bits (258), Expect = 3e-56 Identities = 453/663 (68%), Gaps = 8/663 (1%) Strand=Plus/Plus Query 72271 CCACTGGCACGAATATTGC-TA-ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 72328 ||| | |||||||| ||| || ||| | | || ||||| || || |||| ||||| | Sbjct 36707 CCAGTCGCACGAATCTTGTGTACATTCAAA--CCGATTCCACCAGCATTTTTCGAGATCA 36764 Query 72329 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 72388 |||| ||| |||| | ||||| ||||| ||| || |||||| |||| | || | Sbjct 36765 ATGCACATTGTTTCAGAGTATCGTAGATTCCCAAGATCGAATCATCGCTCATTGTTAGCA 36824 Query 72389 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448 ||| || |||||||| | |||| |||||||| || || || || || ||||| | Sbjct 36825 AAAAGCAAGATGACATTTGTGGCCGACGAGTTCCCGAGTTGAACAATGTTGGCGAAGCAT 36884 Query 72449 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 72508 | || | || | || |||| |||||||| || || || |||| || | ||| | Sbjct 36885 GTGTCATATATCTCTCCGACATGAGATTGTAGGTTTCGATGGCTGCATCAACATCGTCTC 36944 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 || ||||| || | || | ||| ||||| || || || | ||| ||||| | | || Sbjct 36945 CGTGAATTCCAACAGAAACTCTCATCAACATTTGTTGTGGGCGTTCGACGATTTGATCAT 37004 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 |||||||| | || ||| |||||| |||||| |||||||| || ||||||| | | Sbjct 37005 CGATTTTCAAAAGATACGATCTTTCCAGAGTTTTGAAACCAAAGAAGGTGTATGAGTAAT 37064 Query 72629 CTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGG 72688 | || ||||||| || | || || |||||||| || ||| ||| | ||| | Sbjct 37065 CGCGATCGTAAACGATGGCTGAGTTAAGTTTATCTGCATTTTTCATAATTGTATTGTAAG 37124 Query 72689 TGATACTTGA--AATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAA 72746 | | ||||| ||| || |||||||||| || | ||||| | | | | | || Sbjct 37125 T--TTCTTGACTAATCATTGGAGAATGTTGTCCGGTCAAAGGATGATGGAATTCGTACAA 37182 Query 72747 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTAT 72806 | | |||||||||| || | ||| ||||||| |||||| | || || || || || Sbjct 37183 AGTTTTCATCACTTCAGAGAAAACTTTGTTTGTTTTCTTGTGCAAGTTAGAAACAGCAAT 37242 Query 72807 TCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGC 72866 ||| || || |||| ||||| ||||||||||| || || | || || |||| || Sbjct 37243 TCTTGCAGCAAGAAGAGCATATTCTGGATGTTGAGTTGTCATTGAAGCGGCGGTTTCAGC 37302 Query 72867 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || ||| | |||||||| || |||||||| || || || | ||| ||| || || || Sbjct 37303 GGCAAGATTATCCAATTCAACAGTTGTTACACCTTTGTACAATCCACTGATGACTTTGAT 37362 Query 72927 AGC 72929 || Sbjct 37363 GGC 37365 Score = 221 bits (244), Expect = 2e-52 Identities = 573/862 (66%), Gaps = 20/862 (2%) Strand=Plus/Plus Query 71405 TTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCT 71464 ||||| || | |||||||| | || ||||| |||||||||| |||||||||||| | Sbjct 35786 TTTCG-CTTGCTCACAACTTTCATCCAATGCAGCATAATAAATTGTTTCGAAAATCCGTT 35844 Query 71465 TATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTG 71524 | || | |||| || | | | |||||||| | | || || || |||| Sbjct 35845 TGTTCAAATCTCTGGCAGCTTGAGAAGTGAATGGATATCTCATAAGCATGAAACAATCTG 35904 Query 71525 CTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTG 71584 | |||||||| || || | || || || | || | | |||| ||| ||| ||||| | Sbjct 35905 CCAATCCTTGTACACCTAATCCAATTGGACGATGACGCATATTTGAATTTTTGGCTTCAG 35964 Query 71585 GAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCA 71644 ||| ||||||||||| || || || || || || | ||||| | | | | Sbjct 35965 GAACTGGATAATAATTGATGTCAATGATCTTGTTCAAGTTTCTTGTGAGAGCGCGAGCAA 36024 Query 71645 CATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAA 71701 | || ||||||| ||||| || || || ||||||| ||||| |||| Sbjct 36025 CTTCAGCGAGTTTGACGAAATCGAAAGTCTTTTCAGGGGTTACAAATCGATTCAACGCAA 36084 Query 71702 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGC 71761 ||||||| ||||||||| || || |||| | | | | || ||||||||||||| Sbjct 36085 TTGATGCCAAATTACAAACCGCAACTTCATCTGGACTCGAAACTTCCATAATTTCAGTGC 36144 Query 71762 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 71821 | | ||| || || || ||||| | ||||||||||||| | ||| ||| ||||| Sbjct 36145 ACAAATTCGAGCATTTAATTGTTCCAATATTTTGTTGATTAGTTTTTCGATTAGCCGCAT 36204 Query 71822 CCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA-ATC--GCTTTCC 71878 | ||||| ||| | || | ||||| ||||| ||| ||| ||| | | ||| || Sbjct 36205 CTTTATATGTGATATAAGGCATTCCAGTCTCAATTTGA--TTCGATACAACATGCTC-CC 36261 Query 71879 AGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC--TCTTTCG--TATTGTGTA 71934 | | || || || | | || | || |||||| |||||| |||| || Sbjct 36262 ACAATTTTCTCGCTTTCACAGTTTT----TCTCACTTTTCCCTCTTTCTCATATTTGGTG 36317 Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACAC 71994 || | ||||||||| || |||||| | | || | ||| ||||||| || ||| Sbjct 36318 TAAAGAGCTTCGAACTCTTCACCCCAAACTTCATCGAGTCCTTGACATTCGCAAGGGCAC 36377 Query 71995 ATCAATGACCACTCTCCATCATCATTT-ACTCGTTTCATAAAGAGATCAGGAATCCAAAG 72053 || | ||||| ||| | || || || || |||||||| || | ||| || | |||||| Sbjct 36378 ATTAGCGACCAATCTTCGTC-TCTTTCGACGCGTTTCATGAACAAATCTGGGACCCAAAG 36436 Query 72054 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 72113 ||| | || ||||| | | ||| | || || || || || || ||| ||| Sbjct 36437 AGCCAGGAAAAGATCGCGAGCTCTCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCGAC 36496 Query 72114 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTT 72173 ||| | | |||||| | |||||| ||||| | || || || | | || || ||||| Sbjct 36497 GAATTCGAAAATATCGGCATGCCATGGTTCGAGATAAATAGCAAAGGCACCTGGACGTTT 36556 Query 72174 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 72233 |||||| || ||||| | ||||| || ||||| || ||||| | | |||||||| || Sbjct 36557 GTTTCCACCTTGATCGACATATCTGGCTGTGTTGTTGTAAACGCGAAGCATTGGAACAAG 36616 Query 72234 ACCATTGGATGCACCATTGGTC 72255 |||||| |||| || |||||| Sbjct 36617 ACCATTTGATGTTCCGTTGGTC 36638 Score = 131 bits (144), Expect = 2e-25 Identities = 267/393 (68%), Gaps = 9/393 (2%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || |||||||| || | || ||| || || | || || ||||||| Sbjct 35193 TCCAACCATAGAAATGCATTGATGTGATCGCGGCATAACTTGGTTTAGCCATATGAATAT 35252 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| || |||||| ||||| ||||| | ||||||||||| | || ||| | Sbjct 35253 TCAAACTTTGTGATTGATCAATGAAAGCTCCGCGATCTGCAGCCATCTCAATAATCTCTT 35312 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-- 71044 |||| | |||||||||| ||||| || ||||| || || || ||||| |||| Sbjct 35313 TTTGCGATATTTCCCAAACTGTTTTGTACAACTC-TTTGATTTCAGTTGGAA--TTTGTT 35369 Query 71045 ---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATA 71101 |||| ||||| |||||| ||||| | | |||||| || || |||| ||||| Sbjct 35370 CAATATTTTGAATCGATCCATTGCTGGCAATCAATCGATTTTTCATATCATCATCCCATA 35429 Query 71102 ATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACA 71161 || || ||| | | | | ||| ||||| || | ||| || || ||||||| Sbjct 35430 ATCCAAGTTCAACCAAATCCTTCAACAAATGTGGATTGACAATTTGGAAATCGCCAGACA 35489 Query 71162 ATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAA 71221 | || | |||| || ||||| || || ||||| | ||||||||| ||||| | | Sbjct 35490 AAACACGTCGAGAATAGATATTGGAAGTGTATGGTTCAATTGACTCATTGTTTCCGAGGA 35549 Query 71222 TTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 71254 ||||||| || || ||||| ||||| || |||| Sbjct 35550 TTTGAGCTGTGGAAGCAGTTGGCATTGGAGCCA 35582 >seq32583 Length=15821 Score = 147 bits (162), Expect = 3e-30 Identities = 368/552 (67%), Gaps = 29/552 (5%) Strand=Plus/Plus Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 ||||||||| | ||| ||| || | ||||| |||||| | ||| | | |||| Sbjct 6669 CCCAATTCAACCAACAAATGATCAGCAACAAATTCGATATATTGTGACATAAGTCGACAA 6728 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 41998 ||||| || || | | ||| || | |||| |||| | ||||||||||| || ||||| Sbjct 6729 TTCATACCAATCATATCAACAGGCAAAGCCTCAGTCAAGAATTCTTGTTCGATTGAGACG 6788 Query 41999 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 42058 || ||| | ||||| || || | ||| | || ||| | |||| || || || | Sbjct 6789 GCATCTTTGATAATT--TCATA--GATTCGTT-CT---TGGCT-CAATTTATTTTGAAGC 6839 Query 42059 ATCAAA---------CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 ||| || || |||||||| | ||| || || || ||||| ||| | || Sbjct 6840 ATCGAATACAAAAGACAAGCGAAATCACGGTGAAGTCCTTCGTCTCTTGAAATGAGCTCA 6899 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 || ||| || | ||| ||||| | || | |||||| | ||| || || || |||||| Sbjct 6900 TTTGAATGAGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATTGAGGCAAAT 6959 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 42229 || || || ||||| |||||||| || || ||||| ||||| | ||| || || | Sbjct 6960 GAGCCGGAGAAGAATATTCCTTCGACAGCAGCAAATGCAATTAATCTTTCAGCAAATGAT 7019 Query 42230 GCACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 42286 ||| | | || ||||| || |||||||| ||||||||||| | | || Sbjct 7020 GCATTTTTATCAGAAATCCATTTCAAGGCCCAATCAGCCTTCTTTTT----GATGAATTC 7075 Query 42287 G-TTTC---TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 42342 | ||| || ||||| || || | | | |||| | ||| || ||| || || Sbjct 7076 GAATTCGAAAATTGCATTGAAAAGTGAATGTCTTTCTTGTTCATCGCGAATATAAGTTTC 7135 Query 42343 GATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 ||||| ||||||||||||||||||||||||||| || || || ||||| || || Sbjct 7136 AATCAATTTTGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTGGAATCCATAAAA 7195 Query 42403 ACATCTGGCCTC 42414 ||| ||| || Sbjct 7196 GAATCGGGCTTC 7207 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 42449 AAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 42508 || ||||| || || ||||| ||| || || ||||| ||||| ||| | | ||| Sbjct 7397 AAGTTTTCATTGACAATTCCATCAGAAGCAGCGAAAAATGCCAAAACACGAGAAACAAAG 7456 Query 42509 TATTTTTCGTCCGGTGTTAATTTATTCC-AATCATTGATATCTTTAGATATATCTACTTC 42567 ||| ||| || ||| |||| |||| |||| || |||||||| | ||| ||||| Sbjct 7457 AATTGTTCATCTCC-GTTCATTTTTTCCCAATCTTTCATATCTTTTCCCAAATCAACTTC 7515 Query 42568 TTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTG 42627 ||| || ||||| |||||||| | ||||| || || | | ||| || ||||| || Sbjct 7516 TTCAACAGTCCAGAATGATGCAACAGCCTTCTTGTAAAACTCCCAAATTGTATGATGTTT 7575 Query 42628 AATTGGGAAAATAACAAATCTATT 42651 | |||||||||||| |||| ||| Sbjct 7576 GAGTGGGAAAATAACGAATCGATT 7599 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/142 (74%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 41715 TTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTC---TTCTTGAGACATAACTCCCA 41771 || |||| |||||| | || | | ||| ||| || ||||| | |||||| || Sbjct 6427 TTGTTTAGAAGTCAGCTTCGAGATCAAATTGACGTTCAGATTCTTTTGTCATAACACCAG 6486 Query 41772 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATAT 41831 | |||| ||||| |||||||| ||||| ||||| || ||||| || | |||||||| Sbjct 6487 GTCTTTGATATTCGGAAACACGTTTCTCGAAGAAATTTGTTTTTCCGTCGATTGATATAT 6546 Query 41832 TTTCCATGAAATCAAACGGATT 41853 ||||||||||||| || ||||| Sbjct 6547 TTTCCATGAAATCGAATGGATT 6568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670857665494840