Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq13386 161 7e-35 seq16010 105 5e-18 >seq13386 Length=19191 Score = 161 bits (178), Expect = 7e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||| ||||| || ||||| || || |||||||| |||||||| ||| Sbjct 13976 CCTCCTCTCAATCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGGAG 14035 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||| |||||||| || ||| | ||||| | ||||||||| |||| Sbjct 14036 AGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGA 14095 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || ||| ||| || | || |||||||| | ||| || Sbjct 14096 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGACT 14155 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| || |||| |||||| ||||| |||||||| Sbjct 14156 TCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 14202 Score = 145 bits (160), Expect = 6e-30 Identities = 161/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || || || || |||||||| |||||||| ||| || |||| ||||||| Sbjct 12216 AACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTTCCGTCTTC 12275 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||| || ||| | ||||| | ||||||||| ||| |||||||||||||| Sbjct 12276 CAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTG 12335 Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 |||||| ||| || ||| |||| |||||||| | || || || | ||| ||||| | Sbjct 12336 AATTTTAGCT-TTGACATTTTCGATGGTATCAGAAGCCTCAACTTCAAGGGTGATGGTCT 12394 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || |||| |||||| ||||| ||||||||| Sbjct 12395 TTCCGGTCAAAGTTTTGACAAAGATTTGCATA 12426 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||| ||||| || || || || || || ||||| || || ||||| Sbjct 13011 CCTCCTCTCAATCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATCCGAA 13070 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||| |||||||| || ||| | ||||| | ||||||||| |||| Sbjct 13071 AGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGA 13130 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| || ||| ||| ||| |||| ||||| || | ||| || Sbjct 13131 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCGACT 13190 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || ||||| || || || || || || |||||||||||| Sbjct 13191 TCCAAGGTGATAGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCATA 13238 Score = 143 bits (158), Expect = 2e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| |||||||| |||||||| ||| ||| |||| | ||||| Sbjct 13538 ACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCC 13597 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-ACA 15273 |||||||| || || | ||||| | ||||||||| ||||||||||||||| || | Sbjct 13598 AATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGA 13657 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 | ||||||| || ||| |||| || || || | ||| || || || || |||||||| Sbjct 13658 ATTTTTGCT-TTGACATTTTCAATTGTGTCCGAAGCTTCAACTTCCAATGTGATGGTTTT 13716 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||||| ||||| ||||||||| Sbjct 13717 TCCAGTCAATGTTTTGACAAAGATTTGCATA 13747 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||| || || || ||||| |||||||| ||| ||| | | | ||||| Sbjct 11988 AACCAAATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTC 12047 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||| || ||| | || | ||||||||| || ||| |||||||| ||||| Sbjct 12048 CAATTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTG 12107 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| || |||| ||||| || ||| || || ||||| |||||||| Sbjct 12108 GATCTTGGCCTTGACGTTTTCGATGGTGTCAGAGGCTTCGACTTCCAAGGTGATGGTTTT 12167 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||||||||| Sbjct 12168 GCCGGTGAGGGTCTTGACGAAAATTTGCAT 12197 Score = 96.9 bits (106), Expect = 3e-15 Identities = 114/152 (75%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 || ||| | || | |||||||||||| |||||||||||||||||| ||| ||| Sbjct 14410 CCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCT 14469 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| |||| |||||||| | ||| || || | || ||||| || || || || Sbjct 14470 TTCACATTTTCGATGGTATCAGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCGGTAAGT 14529 Query 15344 GTTTTTACAAAAATTTGCAT-ATT--TGAAAA 15372 ||||| |||||||||||||| ||| |||||| Sbjct 14530 GTTTTGACAAAAATTTGCATGATTTCTGAAAA 14561 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCT 15211 ||| || |||||||| || || ||||| |||||||||| | | ||| || | ||| Sbjct 13765 AACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAAT--CAGACAATGTGCGTCCATCT 13822 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| || || | || | ||||||||| || ||| |||||||| ||||| Sbjct 13823 TCCAATTGTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCT 13882 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || || ||| || ||| |||| ||||| || | ||| || || | || || || Sbjct 13883 TGGATCTTAGCT-TTGACATTTTCGATGGTGTCAGAAGCTTCAACTTCAAGTGTGATTGT 13941 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || || || || || |||||||| Sbjct 13942 TTTTCCAGTGAGTGTCTTGACGAAGATTTGCAT 13974 >seq16010 Length=816 Score = 105 bits (116), Expect = 5e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || || ||||| ||||||||||| ||| |||| | ||||| Sbjct 155 AACCAAATGGAGTGTTGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCTTC 214 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-AC 15272 |||||||| || || | ||||| | |||||| | ||| |||||||| || || Sbjct 215 CAATTGTTTTCCGGCAAAAATCAATCTTTGTTGATGTGGTGGGATTCCTTCGTTATCTTG 274 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || ||||||| || ||| |||| || || ||| | ||| || || | || || |||| Sbjct 275 AATTTTTGCT-TTGACATTTTCAATTGTGTCGGAAGCTTCGACTTCGAGTGTGATAGTTT 333 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || |||| ||||| || | ||||||||| Sbjct 334 TTCCAGTCAATGTTTTGACGACGATTTGCATA 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362031068594019