Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq13386 89.7 3e-13 >seq13386 Length=19191 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || || || ||||| || |||||||||||||| || || || ||| Sbjct 13766 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAATGTGCGTCCATCTTCC 13825 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| ||||| ||| || | |||||| || || | || || ||||| || || Sbjct 13826 AATTGTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 13885 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || ||| || ||||| | || ||| || || || || |||||| Sbjct 13886 ATCTTAGCTTTGACATTTTCGATGGTGTCAGAAGCTTCAACTTCAAGTGTGATTGTTTTT 13945 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || ||||| |||||||| Sbjct 13946 CCAGTGAGTGTCTTGACGAAGATTTGCAT 13974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318647219861982