Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq13386 113 4e-20 seq16010 102 7e-17 >seq13386 Length=19191 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| ||| Sbjct 13974 TTCCTCCTCTCAATCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGG 14033 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | ||||||||||||||| || || | || | || ||||| || | Sbjct 14034 AGAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTG 14093 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||| ||||| || || || || | ||| | ||| || ||| Sbjct 14094 GAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGA 14153 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||| || |||||||| || ||||| ||||||||||| ||||||||| Sbjct 14154 CTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCATT 14203 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || || |||||||| |||||||| ||| | |||| | ||||||| Sbjct 13538 ACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCC 13597 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || ||| |||| | || ||||| || || | |||||||| || | Sbjct 13598 AATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGA 13657 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 |||||| ||| || | ||| | || || ||| ||||| || |||||||| Sbjct 13658 ATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACTTCCAATGTGATGGTTTTT 13717 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| ||||||||||| |||||||| Sbjct 13718 CCAGTCAATGTTTTGACAAAGATTTGCAT 13746 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || ||||| ||||||||||| |||||||| ||| | ||| | |||||| Sbjct 12217 ACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTTCCGTCTTCC 12276 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || || | || | || ||||| || || | ||||||||||| | Sbjct 12277 AATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGA 12336 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| ||| || | | | | ||| || || ||| | ||| ||||| || Sbjct 12337 ATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAACTTCAAGGGTGATGGTCTTT 12396 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||| ||||||||||| |||||||| Sbjct 12397 CCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 >seq16010 Length=816 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| ||||| ||||| ||||| ||||||||||| | |||| | ||||||| Sbjct 156 ACCAAATGGAGTGTTGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCTTCC 215 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || ||| |||| | || ||||||| || | ||||| || || | Sbjct 216 AATTGTTTTCCGGCAAAAATCAATCTTTGTTGATGTGGTGGGATTCCTTCGTTATCTTGA 275 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 |||||| ||| || | ||| | ||| || ||| ||| | || || ||||| Sbjct 276 ATTTTTGCTTTGACATTTTCAATTGTGTCGGAAGCTTCGACTTCGAGTGTGATAGTTTTT 335 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| |||||||| | |||||||| Sbjct 336 CCAGTCAATGTTTTGACGACGATTTGCAT 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419415588704079