Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq32583 149 5e-31 >seq32583 Length=15821 Score = 149 bits (164), Expect = 5e-31 Identities = 378/564 (67%), Gaps = 12/564 (2%) Strand=Plus/Plus Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 ||| || ||||| | ||||| ||||||||||| || || || ||| ||| || || Sbjct 6665 ACAACCCAATTCAACCAACAAATGATCAGCAACAAATTCGATATATTGTGACAT-AAGTC 6723 Query 13021 -ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATAT 13079 ||| ||||| || || | | ||||||| ||| || || || || | || ||| || Sbjct 6724 GACAATTCATACCAATCATATCAACAGGCAAAGCCTCAGTCAAGAATTCTTGTTCGATTG 6783 Query 13080 CAACTGCTTCGATAACTATGTCTCTTATTACGTTCT---CT-AATGGAGGATTTGATAGA 13135 || || || | | || || ||| |||||| || ||| | ||||| | Sbjct 6784 AGACGGCATCTTTGATAATTTCATAGATT-CGTTCTTGGCTCAATTTAT--TTTGAAGCA 6840 Query 13136 TGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCG 13195 | | | ||| | ||| || ||||||| ||| | |||||| ||||| || ||||| Sbjct 6841 T-CGAATACAAAAGACAAGCGAAATCACGGTGAAGTCCTTCGTCTCTTGAAATGAGCTCA 6899 Query 13196 TTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAAC 13255 |||||| || | || ||||| | |||| ||||| | ||| || || | ||||| Sbjct 6900 TTTGAATGAGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATTGAGGCAAAT 6959 Query 13256 GAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA 13315 || || || || ||||||||||| || || ||||| || || || |||||| || | | Sbjct 6960 GAGCCGGAGAAGAATATTCCTTCGACAGCAGCAAATGCAATTAATCTTTCAGCAAATGAT 7019 Query 13316 CTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATA 13375 ||||||| ||||| || |||||| | || || | ||| | | | ||| | Sbjct 7020 GCATTTTTATCAGAAATCCATTTCAAGGCCCAATCAGCCTTCTTTTTGATGAA-TTCGAA 7078 Query 13376 TTTTCTA-TTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 || | |||| || || | ||| | |||| | || ||||||||| || || Sbjct 7079 TTCGAAAATTGCATTGAAAAGTGAATGTCTTTCTTGTTCATCGCGAATATAAGTTTCAAT 7138 Query 13435 CAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 |||| |||||||||||||||||| ||||| || || |||||||| |||||||| | Sbjct 7139 CAATTTTGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTGGAATCCATAAAAGAA 7198 Query 13495 TCTAGCCTCTGATACCTGAACTTC 13518 || || ||||| || | ||||| Sbjct 7199 TCGGGCTTCTGAGACTTTGACTTC 7222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430806128063718