Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq13386 163 7e-35 seq32583 125 2e-23 seq30935 120 7e-22 seq16010 100 7e-16 >seq13386 Length=19191 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | ||| || | || | || || ||||| || || || ||||| Sbjct 13517 ATTCCTCCTCTGAGACGAAGGACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCG 13576 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || ||||| | ||||||||| |||||||| | || ||||| || || Sbjct 13577 GAGAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGT 13636 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| ||||| |||||||| |||||||| | || || || ||| Sbjct 13637 GGAATTCCTTCTTTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCA 13696 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || || || ||||| | |||||| ||||| || ||||| Sbjct 13697 ACTTCCAATGTGATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCAT 13746 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | ||| || | || | ||| |||||||| ||||| || ||||| Sbjct 12196 ATTCCTCCTCTGAGACGAAGAACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCG 12255 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| |||||||| | ||||||||| || || || | || ||||| || || Sbjct 12256 GAGAGGGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGT 12315 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| || ||||| || ||||| |||||||| | |||||| || || Sbjct 12316 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCA 12375 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| || || | ||||| ||||| || ||||| Sbjct 12376 ACTTCAAGGGTGATGGTCTTTCCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | || | || | || | ||| ||||| || ||||||||||| || Sbjct 13008 ATTCCTCCTCTCAATCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATCC 13067 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| || ||||| | ||||||||| || || || | || ||||| || || Sbjct 13068 GAAAGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGT 13127 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| || || ||||| || || |||||||| | ||| || || ||| Sbjct 13128 GGAATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCG 13187 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || ||||| || || || || || || || || || ||||| Sbjct 13188 ACTTCCAAGGTGATAGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCAT 13237 Score = 118 bits (130), Expect = 2e-21 Identities = 125/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || || || || | ||||| || || || ||||||||||| || |||||||| ||| Sbjct 14410 CCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCT 14469 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | |||||| || ||| || || ||||| || ||||| || |||||| Sbjct 14470 TTCACATTTTCGATGGTATCAGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCGGTAAGT 14529 Query 104540 GTTTTTACAAATATCTGCAT--TTTGTGTACAGTATTTATTAGA 104581 ||||| ||||| || ||||| ||| || | | |||| ||| || Sbjct 14530 GTTTTGACAAAAATTTGCATGATTTCTGAAAAATATTGATTTGA 14573 >seq32583 Length=15821 Score = 125 bits (138), Expect = 2e-23 Identities = 248/362 (69%), Gaps = 19/362 (5%) Strand=Plus/Minus Query 268934 GAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTAC 268993 |||||| ||| ||||| |||||||| || || || ||||| ||||||||||| ||||| Sbjct 7207 GAAGCCCGATTCTTTTATGGATTCCAAATTGCAATTGAAAACATTCATTCAGAAATGTAT 7148 Query 268994 AGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCT 269053 ||| || || |||||||| ||| | | |||||| ||| ||| ||| | Sbjct 7147 TCAAAATTGATTGAAACTTATATTCGCGATGA-----ACAAGAAA-GAC-ATTCACTTTT 7095 Query 269054 --ATGAGAACTATGGACTGTG------TGAGaaaaaaaTCTGAATGGGCTCTGAAATGGA 269105 ||| || | | || | | | | ||| || |||| ||||| ||||||||| Sbjct 7094 CAATGC-AATTTTCGAATTCGAATTCATCAAAAAGAAGGCTGATTGGGCCTTGAAATGGA 7036 Query 269106 TAAACGATAGC---GCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTA 269162 | |||| || | | | ||||| ||| |||| ||||| ||||| ||||| | Sbjct 7035 TTTCTGATAAAAATGCATCATTTGCTGAAAGATTAATTGCATTTGCTGCTGTCGAAGGAA 6976 Query 269163 TATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAG 269222 ||||||| || || || |||||| | || || |||||||| || ||||| | ||||||| Sbjct 6975 TATTCTTCTCCGGCTCATTTGCCTCAATTTTCTGGTTGAAAAAGAGAGGATTGATGCCAG 6916 Query 269223 GATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTT 269282 |||| ||| || || || | || || |||||||| | ||| | || ||||||| Sbjct 6915 GATTGACTCATTCAAATGAGCTCATTTCAAGAGACGAAGGACTTCACCGTGATTTCGCTT 6856 Query 269283 GT 269284 || Sbjct 6855 GT 6854 >seq30935 Length=6295 Score = 120 bits (132), Expect = 7e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || ||||| || ||||| | || || || ||||||||||| Sbjct 1464 GTCGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCGAGTTGTTTTCCG 1405 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | || |||||||| || || |||||||| || || || ||||| ||||| Sbjct 1404 GCGAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTG 1345 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 |||||||| | ||| || | ||| || || || || ||||| |||||||| || || || Sbjct 1344 ACATTTTCGATGGTGTC-CGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGAGT 1286 Query 104542 TTTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 1285 CTTGACGAAGATTTGCAT 1268 >seq16010 Length=816 Score = 100 bits (110), Expect = 7e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 ||||| | || |||||||| || || |||||||| || ||||| ||||| ||||| ||| Sbjct 3 AAAATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTGACA 62 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTT 104545 ||||| | ||| ||| || ||| || || || || || || || || ||||||||||| Sbjct 63 TTTTCAATGGTGTCGGAAGCTTCGACTTCGAGGGTGATGGTTTTTCCGGTAAGTGTTTTG 122 Query 104546 ACAAATATCTGCATT 104560 || || || || ||| Sbjct 123 ACGAAGATTTGAATT 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150903327832772