Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq32786 120 4e-22 seq32252 116 4e-21 >seq32786 Length=16869 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 7132 AATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAA 7191 |||||||| | ||| || ||||||||||| |||||||||| ||||| || ||||||||| Sbjct 7451 AATTGATCAACACCTTGTCCTTCATAATTTGTATGACAATCGATATATTTCGCTCCAAAA 7392 Query 7192 TGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCC 7250 |||| ||||||||| || |||| || || ||||| |||||||| |||| | |||| || Sbjct 7391 TGTCGCCATTGAAAACCGTAAACCGGTCCCAAATCGCCTTCTTCTCGATCAGTAAAACC 7333 >seq32252 Length=5867 Score = 116 bits (128), Expect = 4e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 164783 TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATA 164842 ||||||| |||| || ||||| || | || ||||| |||||||| ||| || |||| Sbjct 1647 TTCATGACACAGTTGTAAATCAATTATTATCAAAAATGGATGGTGTTGAACAATTGAATA 1706 Query 164843 ATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGAC 164902 ||||| | || | || ||||| || ||| ||| | |||||||| || | || ||| Sbjct 1707 ATATTCTTGTTATTGGAATGACAAATCGAAAAGATATGATTGATGAAGCACTTTTGAGAC 1766 Query 164903 CTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAA 164962 ||||| |||||||| | |||| ||| || |||| | || ||| ||| | ||||||| Sbjct 1767 CTGGTAGATTAGAAGTTCAAATGGAAGTATCATTAGCTGATGAAGCTGGAAGACTTCAAA 1826 Query 164963 TTTTAAAAGTTCATGTGGCTAAAATGA 164989 |||| ||| ||||| || | ||||| Sbjct 1827 TTTTGAAAATTCATACAGCAAGAATGA 1853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595622039144400