Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq13386 154 1e-32 seq16010 114 1e-20 >seq13386 Length=19191 Score = 154 bits (170), Expect = 1e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||||||||| ||| |||||||| | || ||||| ||||| | ||| | Sbjct 13968 TTTGCATTCCTCCTCTCAATCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGT 14027 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| | || | ||| |||| ||||||||| | ||||| |||||||| || | Sbjct 14028 AGTCGGAGAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGT 14087 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||| ||||| ||||| | || || ||||||||| | | || |||| Sbjct 14088 CTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAG 14147 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | ||||||||||||||||| | |||||| |||||||| ||||| Sbjct 14148 CTTCGACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 14202 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||||||||||| ||| |||||||| | || ||||||||||| | |||||||| Sbjct 13007 CATTCCTCCTCTCAATCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATC 13066 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | || || ||| |||| ||||||||| | ||||| |||||||| || ||||| Sbjct 13067 CGAAAGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGG 13126 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||||| ||||||||||| | || || |||||||| | | ||||||| || Sbjct 13127 TGGAATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTC 13186 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | ||||| ||||| || || || || || || || || ||||| Sbjct 13187 GACTTCCAAGGTGATAGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCAT 13237 Score = 131 bits (144), Expect = 2e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||| | || | |||||||| | || || || ||||| | ||| | Sbjct 13512 TTTGCATTCCTCCTCTGAGACGAAGGACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGT 13571 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| | ||| | ||| |||| ||||||||| |||| || |||||||| || | Sbjct 13572 AGTCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGGT 13631 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||| |||||||| || | ||||||||| ||||| | | ||||| | Sbjct 13632 CTGGTGGAATTCCTTCTTTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCCGAAG 13691 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||||||||||||||||| | ||||| |||||||| ||||| Sbjct 13692 CTTCAACTTCCAATGTGATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCAT 13746 Score = 129 bits (142), Expect = 5e-25 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||||||| | || | |||||||| | || ||||| ||||| | | Sbjct 12187 AAAATTTGCATTCCTCCTCTGAGACGAAGAACCAAGTGGAGTGTTGATTCTTTTTGAATG 12246 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| | || | || |||| ||||||||| | ||||| |||||||| Sbjct 12247 TTGTAGTCGGAGAGGGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGT 12306 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| || || ||||||||||| | |||||| || ||||| ||| || ||| Sbjct 12307 TGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTATCA 12366 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| |||||||| ||||| || | |||||| |||||||| ||||| Sbjct 12367 GAAGCCTCAACTTCAAGGGTGATGGTCTTTCCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||| ||||||||||| | ||| || ||| | |||| ||| ||| Sbjct 11989 ACCAAATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTCC 12048 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||||||| | ||||| | | ||| |||||||| || || ||||| ||||| | Sbjct 12049 AATTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 12108 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| ||| ||||||| | ||||| || | ||||||||||| Sbjct 12109 ATCTTGGCCTTGACGTTTTCGATGGTGTCAGAGGCTTCGACTTCCAAGGTGATGGTTTTG 12168 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || || ||||| Sbjct 12169 CCGGTGAGGGTCTTGACGAAAATTTGCAT 12197 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | |||||||||||||| | ||| ||||| || ||| ||| ||| Sbjct 13766 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAATGTGCGTCCATCTTCC 13825 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||||||| |||| || | | ||| |||||||| || || ||||| ||||| | Sbjct 13826 AATTGTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 13885 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || ||||| ||| ||||||| || || |||| ||||| |||||| Sbjct 13886 ATCTTAGCTTTGACATTTTCGATGGTGTCAGAAGCTTCAACTTCAAGTGTGATTGTTTTT 13945 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || ||||| ||||| Sbjct 13946 CCAGTGAGTGTCTTGACGAAGATTTGCAT 13974 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| ||||||| |||||||| || ||||| ||||| ||||| ||||| | || || || Sbjct 12568 CCGGCAAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCT 12627 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 |||||| ||| ||||||| || || || | |||||||||||||| || ||| Sbjct 12628 TTGACGTTTTCGATGGTGTCAGAAGCTTCAACTTCCAATGTGATGGTTTTTCCGGTGAGA 12687 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || || || ||||| ||||| Sbjct 12688 GTCTTGACGAAGATTTGCAT 12707 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| |||||||| || ||||| || || ||||| ||||| | || || || ||||| Sbjct 13385 AAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACA 13444 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| ||||||| ||||| || | |||||||||||||| || | |||||| Sbjct 13445 TTTTCGATGGTGTCAGAAGCTTCGACTTCCAAAGTGATGGTTTTTCCGGTCAAAGTTTTG 13504 Query 94994 ACAAAGATCTGCAT 95007 || ||||| ||||| Sbjct 13505 ACGAAGATTTGCAT 13518 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| | | ||| || ||||| ||||| ||||||||||| | ||| || || || || Sbjct 14416 AAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTCACA 14475 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| || |||| ||||| |||| |||||||| ||||| ||||| ||||| Sbjct 14476 TTTTCGATGGTATCAGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCGGTAAGTGTTTTG 14535 Query 94994 ACAAAGATCTGCATGCTT 95011 ||||| || |||||| || Sbjct 14536 ACAAAAATTTGCATGATT 14553 >seq16010 Length=816 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||||||||| | || | ||||| || | || ||||||||||| | ||| ||||| Sbjct 137 TCCTCCTCTGAGACGAAGAACCAAATGGAGTGTTGATTCCTTTTGGATGTTGTAATCAGA 196 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | ||| | ||| |||| ||||||||| |||| || |||||||| |||| ||| || Sbjct 197 AAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGATGTGGTGG 256 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || ||||| || || | ||||||||| ||||| | | ||||| | ||||| Sbjct 257 GATTCCTTCGTTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCGGAAGCTTCGAC 316 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| ||||||||||| | ||||| || | ||| ||||| Sbjct 317 TTCGAGTGTGATAGTTTTTCCAGTCAATGTTTTGACGACGATTTGCAT 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448103147445240