Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq7709 196 8e-46 seq6525 181 2e-41 seq14018 170 3e-38 seq33319 168 1e-37 seq31968 141 1e-29 seq26115 134 2e-27 seq19411 127 3e-25 seq33063 122 1e-23 seq30514 87.8 3e-13 >seq7709 Length=7107 Score = 196 bits (216), Expect = 8e-46 Identities = 206/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | |||||| || ||||||||||||||||| ||||| |||||| Sbjct 4209 GCCAAACGCCATCGTAAAGTTCTTCGCGACAACATCCAAGGAATCACTAAGCCGGCTATC 4150 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||| | || |||||||| ||| ||||||||||| |||| ||||| | | Sbjct 4149 CGACGATTGGCTCGCAGAGGAGGAGTCAAACGTATCTCTGGATTGATCTACGAAGAAACT 4090 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| |||||||| ||||||| || |||| || Sbjct 4089 CGTGGAGTTCTCAAGGTGTTCCTTGAGAACGTTATCCGTGATGCTGTCACCTATTGTGAA 4030 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | |||||||||||| |||||||| | ||||| || ||||| | |||||| Sbjct 4029 CATGCCAAGAGAAAGACTGTCACCGCCATGGATGTTGTCTACGCTTTGAAGAGACAAGGC 3970 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | | || || || ||| | |||| || Sbjct 3969 CGAACTCTCTACGGATTCGGAGGATAATTTT 3939 Score = 104 bits (114), Expect = 4e-18 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 16524 GTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCG 16583 || ||||||||||| |||| ||||| | ||||| ||| | ||| | ||||| ||| || Sbjct 3835 GTATCTCTGGATTGATCTACGAAGAAACTCGTGGAGTTCTCAAGGTTTTCCTTGAGAACG 3776 Query 16584 TTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGG 16643 |||||| |||||| || |||| || || || || | |||||||||||| | |||| Sbjct 3775 TTATCCGAGATGCTGTCACCTATTGTGAACATGCCAAGAGAAAGACTGTCACCGCAATGG 3716 Query 16644 ATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | |||||||| | || | |||||||| | | || || || ||| | |||| Sbjct 3715 ATGTTGTCTATGCTCTCAAGAGACAAGGCCGCACTCTCTACGGATTCGGAGGATAAT 3659 >seq6525 Length=6306 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | ||||| || ||||||||||||||||||||||| |||||| Sbjct 2359 GCCAAACGCCATCGTAAAGTGCTTCGCGACAACATCCAAGGAATCACCAAGCCGGCTATC 2418 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||| | || |||||||| ||| |||||||||| |||| ||||| | | Sbjct 2419 CGACGATTGGCTCGCAGAGGAGGAGTCAAACGTATCTCTGGATTAATCTACGAAGAAACT 2478 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||||||| ||||||| || ||| || Sbjct 2479 CGTGGAGTTCTCAAGGTTTTCCTTGAGAATGTTATCCGTGATGCTGTCACCTACTGTGAA 2538 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | |||||||||||| |||||||| | |||||||| | || | |||||| Sbjct 2539 CATGCCAAAAGAAAGACTGTCACCGCCATGGATGTTGTCTATGCTCTTAAGAGACAAGGC 2598 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | || || || ||| | |||| Sbjct 2599 CGCACTCTCTACGGATTCGGAGGATAAT 2626 >seq14018 Length=6030 Score = 170 bits (188), Expect = 3e-38 Identities = 202/270 (75%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | |||||| || ||||||||||||||||| ||||| ||||| Sbjct 470 GCCAAACGCCATCGTAAAGTTCTTCGCGACAACATCCAAGGAATCACTAAGCCGGCTATT 411 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||| | || |||||||| ||| |||||||||| |||| ||||| | | Sbjct 410 CGACGATTGGCTCGCAGAGGAGGAGTCAAACGTATCTCTGGATTAATCTACGAAGAAACT 351 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CG 16610 |||| ||| | ||| | ||||| ||| ||||||| ||||||| | ||| ||| | Sbjct 350 CGTGGAGTTCTCAAGGTATTCCTTGAGAATGTTATCCGTGATGCTGT-TACT-TACTGTG 293 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || || || | ||||| |||||| |||||||| | |||||||| | ||| | |||| Sbjct 292 AACATGCCAAGAGAAAGACAGTCACCGCCATGGATGTTGTCTATGCTCTCAAAAGACAAG 233 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | || | | || ||||||||| | |||| Sbjct 232 GTCGCACCCTCTACGGTTTTGGAGGATAAT 203 >seq33319 Length=21097 Score = 168 bits (186), Expect = 1e-37 Identities = 200/271 (74%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | ||||| || |||||||||||||||||||||||||| ||| Sbjct 8198 GCCAAACGCCATCGTAAAGTGCTTCGTGACAACATCCAAGGAATCACCAAGCCAGCCATC 8257 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | ||||||| | || |||||||| ||| ||||||||||| |||| ||||| | | Sbjct 8258 AGAAGATTGGCTCGCAGAGGAGGAGTCAAACGTATCTCTGGATTGATCTACGAAGAAACT 8317 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | || | ||||| ||| ||||||| |||||| || ||| || Sbjct 8318 CGTGGAGTTCTCAAAGTGTTCCTTGAGAATGTTATCCGAGATGCTGTCACTTATTGTGAA 8377 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||||||||| | |||||| | |||||||| ||||| | |||||| Sbjct 8378 CATGCCAAGAGAAAGACTGTCACTGCTATGGATGTTGTCTATGCTTTGAAGAGACAAGGC 8437 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | | || || |||||| | |||| || Sbjct 8438 CGCACTCTCTACGGATTTGGAGGATAATTTT 8468 >seq31968 Length=22129 Score = 141 bits (156), Expect = 1e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | |||||| || ||||| |||||||||||||||||||| || Sbjct 12985 GCCAAACGCCATCGCAAAGTTCTTCGTGACAACATTCAAGGAATCACCAAGCCAGCGATT 12926 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | ||||||| || ||||||||||| ||| |||||||||| | |||||||| | | Sbjct 12925 CGCAGATTGGCTCGACGAGGTGGAGTCAAACGTATCTCTGGATTAATTTATGAAGAAACT 12866 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||||| ||| ||||||| |||||| | ||| || Sbjct 12865 CGAGGAGTTCTCAAGGTTTTCCTTGAGAATGTTATCCGGGATGCTGTTACTTATTGTGAA 12806 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGAT 16645 || || || | ||||||||||| | |||||| Sbjct 12805 CATGCCAAGAGAAAGACTGTCACTGCTATGGAT 12773 >seq26115 Length=6844 Score = 134 bits (148), Expect = 2e-27 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 16482 AGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCT 16541 ||||||| || |||||| ||||||||||||||||||| || ||| | ||||||||| | | Sbjct 4152 AGCCAGCCATTCGTCGTTTGGCTCGTCGTGGTGGAGTAAAACGTATTTCTGGATTGATTT 4093 Query 16542 ATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCC 16601 ||||||| | |||| ||| | ||| | |||||| | | || || | ||||||| || Sbjct 4092 ATGAAGAAACACGTGGAGTTCTCAAGGTGTTCCTCGAAAATGTGATTCGTGATGCTGTCA 4033 Query 16602 ACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGA 16661 ||| || || || ||| | |||||||| || | |||||| | || ||||| |||| Sbjct 4032 CATATTGTGAACATGCGAAAAGAAAGACTGTGACTGCAATGGATGTTGTTTATGCTTTGA 3973 Query 16662 AACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | ||||| | | | || |||||||| | |||| || Sbjct 3972 AAAGACAAGGAAGAACTCTCTACGGTTTTGGTGGATAATTTT 3931 >seq19411 Length=194 Score = 127 bits (140), Expect = 3e-25 Identities = 133/175 (76%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 16500 TGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATG 16559 ||||||| | || |||||||| ||| ||||||||||| |||| ||||| | ||||| | Sbjct 4 TGGCTCGCAGAGGAGGAGTCAAACGTATCTCTGGATTGATCTACGAAGAAACTCGTGGAG 63 Query 16560 TTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTA 16619 || | ||| | ||||| ||| |||||||| ||||||| || |||| || || || | Sbjct 64 TTCTCAAGGTGTTCCTTGAGAACGTTATCCGTGATGCTGTCACCTATTGTGAACATGCCA 123 Query 16620 AACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 | | |||||||||||| | |||||| | |||||||| | || | |||||||| Sbjct 124 AGAGAAAGACTGTCACCGCAATGGATGTTGTCTATGCTCTCAAGAGACAAGGCCG 178 >seq33063 Length=37674 Score = 122 bits (134), Expect = 1e-23 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 || || ||||| | | ||||| || ||||| ||||||||||| |||||||||||||| Sbjct 19035 AAACGCCATCGTAAAGTGCTTCGTGACAACATGCAAGGAATCACGAAGCCAGCTATCCGA 19094 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 | |||||||| | || |||||||| ||| |||| |||||| |||| ||||||| |||| Sbjct 19095 AGATTGGCTCGTAGAGGAGGAGTCAAACGTATCTCCGGATTGATCTACGAAGAGACTCGT 19154 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTAT 16587 | ||| | ||| | | ||| ||| |||||| Sbjct 19155 GGAGTTCTCAAGGTTTGCCTTGAGAACGTTAT 19186 >seq30514 Length=44996 Score = 87.8 bits (96), Expect = 3e-13 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 || |||||| |||| ||||||| |||| | ||| | | | | | ||| ||| ||||||| Sbjct 41115 TCCGGATTGATCTACGAAGAGACTCGTTAAGTTCTCACGGTTTCCCTTGAGAACGTTATC 41174 Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648 | || |||| || |||| || || || || | |||||||||||| | |||||| | Sbjct 41175 CGTGTTGCTGTCACCTATTGTGAACATGCCAAGAGAAAGACTGTCACCGCAATGGATGTT 41234 Query 16649 GTCTATGCATTGAAACGTCAAGGCCG 16674 |||||||| | || | |||||||| Sbjct 41235 GTCTATGCTCTCAAGAGACAAGGCCG 41260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79044516771387